Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC20.36■□□□□ 0.85
FOXA3P55318 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXA3P55318 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
FOXA3P55318 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA3P55318 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC20.34■□□□□ 0.85
FOXA3P55318 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
FOXA3P55318 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
FOXA3P55318 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
FOXA3P55318 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXA3P55318 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
FOXA3P55318 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC20.3■□□□□ 0.84
FOXA3P55318 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
FOXA3P55318 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
FOXA3P55318 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
FOXA3P55318 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
FOXA3P55318 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
FOXA3P55318 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
FOXA3P55318 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
FOXA3P55318 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA3P55318 INO80B-203ENST00000409917 796 ntTSL 2 BASIC20.25■□□□□ 0.83
FOXA3P55318 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC20.25■□□□□ 0.83
FOXA3P55318 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA3P55318 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA3P55318 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
FOXA3P55318 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
FOXA3P55318 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
FOXA3P55318 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
FOXA3P55318 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA3P55318 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
FOXA3P55318 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
FOXA3P55318 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
FOXA3P55318 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
FOXA3P55318 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
FOXA3P55318 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
FOXA3P55318 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
FOXA3P55318 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
FOXA3P55318 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
FOXA3P55318 AC015813.7-201ENST00000623294 581 ntBASIC20.19■□□□□ 0.82
FOXA3P55318 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
FOXA3P55318 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
FOXA3P55318 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
FOXA3P55318 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
FOXA3P55318 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
FOXA3P55318 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA3P55318 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC20.15■□□□□ 0.82
FOXA3P55318 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA3P55318 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
FOXA3P55318 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
FOXA3P55318 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
FOXA3P55318 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.13■□□□□ 0.81
FOXA3P55318 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
FOXA3P55318 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC20.13■□□□□ 0.81
FOXA3P55318 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
FOXA3P55318 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXA3P55318 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
FOXA3P55318 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC20.1■□□□□ 0.81
FOXA3P55318 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA3P55318 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA3P55318 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA3P55318 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA3P55318 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA3P55318 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA3P55318 ST7-AS1-201ENST00000456775 1889 ntBASIC20.09■□□□□ 0.81
FOXA3P55318 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA3P55318 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC20.09■□□□□ 0.81
FOXA3P55318 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
FOXA3P55318 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
FOXA3P55318 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXA3P55318 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXA3P55318 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
FOXA3P55318 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
FOXA3P55318 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
FOXA3P55318 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC20.05■□□□□ 0.8
FOXA3P55318 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC20.04■□□□□ 0.8
FOXA3P55318 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.04■□□□□ 0.8
FOXA3P55318 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.03■□□□□ 0.8
FOXA3P55318 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
FOXA3P55318 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA3P55318 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA3P55318 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXA3P55318 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXA3P55318 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXA3P55318 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
FOXA3P55318 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXA3P55318 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXA3P55318 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20■□□□□ 0.79
FOXA3P55318 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC19.99■□□□□ 0.79
FOXA3P55318 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA3P55318 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA3P55318 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA3P55318 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA3P55318 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC19.98■□□□□ 0.79
FOXA3P55318 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
FOXA3P55318 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.96■□□□□ 0.79
FOXA3P55318 AC142086.6-201ENST00000621154 1765 ntBASIC19.96■□□□□ 0.79
FOXA3P55318 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA3P55318 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA3P55318 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
FOXA3P55318 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXA3P55318 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms