Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MIR639-201ENST00000384974 98 ntBASIC38.95■■■■□ 3.83
MSH6P52701 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC38.95■■■■□ 3.83
MSH6P52701 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC38.91■■■■□ 3.82
MSH6P52701 MACF1-219ENST00000484793 834 ntTSL 2 BASIC38.9■■■■□ 3.82
MSH6P52701 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC38.89■■■■□ 3.82
MSH6P52701 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC38.87■■■■□ 3.81
MSH6P52701 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC38.87■■■■□ 3.81
MSH6P52701 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC38.87■■■■□ 3.81
MSH6P52701 DUX4L29-201ENST00000425409 679 ntBASIC38.87■■■■□ 3.81
MSH6P52701 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC38.87■■■■□ 3.81
MSH6P52701 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC38.84■■■■□ 3.81
MSH6P52701 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC38.82■■■■□ 3.81
MSH6P52701 RPS2-209ENST00000529806 993 ntTSL 3 BASIC38.82■■■■□ 3.8
MSH6P52701 HSD17B1P1-201ENST00000590052 955 ntBASIC38.82■■■■□ 3.8
MSH6P52701 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
MSH6P52701 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC38.79■■■■□ 3.8
MSH6P52701 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC38.79■■■■□ 3.8
MSH6P52701 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
MSH6P52701 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC38.77■■■■□ 3.8
MSH6P52701 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC38.77■■■■□ 3.8
MSH6P52701 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC38.77■■■■□ 3.8
MSH6P52701 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC38.75■■■■□ 3.79
MSH6P52701 CALM3-209ENST00000597743 577 ntTSL 4 BASIC38.73■■■■□ 3.79
MSH6P52701 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
MSH6P52701 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC38.71■■■■□ 3.79
MSH6P52701 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC38.7■■■■□ 3.79
MSH6P52701 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC38.7■■■■□ 3.78
MSH6P52701 BRD4-212ENST00000630599 726 ntTSL 2 BASIC38.68■■■■□ 3.78
MSH6P52701 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC38.68■■■■□ 3.78
MSH6P52701 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC38.67■■■■□ 3.78
MSH6P52701 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC38.67■■■■□ 3.78
MSH6P52701 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC38.66■■■■□ 3.78
MSH6P52701 AC021231.2-201ENST00000594613 730 ntBASIC38.66■■■■□ 3.78
MSH6P52701 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC38.63■■■■□ 3.77
MSH6P52701 RNF166-209ENST00000567844 633 ntTSL 5 BASIC38.63■■■■□ 3.77
MSH6P52701 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC38.62■■■■□ 3.77
MSH6P52701 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC38.62■■■■□ 3.77
MSH6P52701 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC38.62■■■■□ 3.77
MSH6P52701 AC016575.1-201ENST00000607026 382 ntBASIC38.62■■■■□ 3.77
MSH6P52701 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC38.61■■■■□ 3.77
MSH6P52701 MIR3648-2-201ENST00000581792 180 ntBASIC38.61■■■■□ 3.77
MSH6P52701 MIR3648-1-201ENST00000615959 180 ntBASIC38.61■■■■□ 3.77
MSH6P52701 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC38.6■■■■□ 3.77
MSH6P52701 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC38.6■■■■□ 3.77
MSH6P52701 WASH5P-204ENST00000632292 975 ntBASIC38.6■■■■□ 3.77
MSH6P52701 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC38.58■■■■□ 3.77
MSH6P52701 GDI1-215ENST00000630693 786 ntTSL 4 BASIC38.58■■■■□ 3.77
MSH6P52701 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC38.57■■■■□ 3.77
MSH6P52701 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC38.57■■■■□ 3.77
MSH6P52701 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC38.56■■■■□ 3.76
MSH6P52701 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC38.56■■■■□ 3.76
MSH6P52701 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC38.55■■■■□ 3.76
MSH6P52701 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC38.55■■■■□ 3.76
MSH6P52701 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC38.51■■■■□ 3.76
MSH6P52701 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC38.5■■■■□ 3.75
MSH6P52701 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC38.49■■■■□ 3.75
MSH6P52701 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC38.46■■■■□ 3.75
MSH6P52701 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC38.46■■■■□ 3.75
MSH6P52701 CIB2-204ENST00000557846 934 ntTSL 3 BASIC38.44■■■■□ 3.74
MSH6P52701 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC38.44■■■■□ 3.74
MSH6P52701 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC38.44■■■■□ 3.74
MSH6P52701 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC38.43■■■■□ 3.74
MSH6P52701 CR559946.2-201ENST00000623684 991 ntBASIC38.43■■■■□ 3.74
MSH6P52701 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC38.43■■■■□ 3.74
MSH6P52701 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC38.42■■■■□ 3.74
MSH6P52701 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC38.4■■■■□ 3.74
MSH6P52701 AGPS-202ENST00000409888 815 ntTSL 4 BASIC38.38■■■■□ 3.73
MSH6P52701 ABHD17AP3-201ENST00000503096 1137 ntBASIC38.38■■■■□ 3.73
MSH6P52701 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC38.36■■■■□ 3.73
MSH6P52701 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC38.36■■■■□ 3.73
MSH6P52701 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC38.35■■■■□ 3.73
MSH6P52701 DUX4L11-201ENST00000611504 1267 ntBASIC38.33■■■■□ 3.73
MSH6P52701 DUX4L12-201ENST00000614593 1267 ntBASIC38.33■■■■□ 3.73
MSH6P52701 DUX4L14-201ENST00000621227 1267 ntBASIC38.33■■■■□ 3.73
MSH6P52701 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC38.31■■■■□ 3.72
MSH6P52701 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC38.31■■■■□ 3.72
MSH6P52701 LINC01971-201ENST00000617888 1048 ntBASIC38.31■■■■□ 3.72
MSH6P52701 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC38.3■■■■□ 3.72
MSH6P52701 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC38.3■■■■□ 3.72
MSH6P52701 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC38.28■■■■□ 3.72
MSH6P52701 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC38.27■■■■□ 3.72
MSH6P52701 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC38.27■■■■□ 3.72
MSH6P52701 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC38.27■■■■□ 3.72
MSH6P52701 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC38.27■■■■□ 3.72
MSH6P52701 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC38.26■■■■□ 3.72
MSH6P52701 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC38.26■■■■□ 3.72
MSH6P52701 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC38.26■■■■□ 3.72
MSH6P52701 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC38.25■■■■□ 3.71
MSH6P52701 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC38.24■■■■□ 3.71
MSH6P52701 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC38.23■■■■□ 3.71
MSH6P52701 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC38.23■■■■□ 3.71
MSH6P52701 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC38.23■■■■□ 3.71
MSH6P52701 AC108673.1-201ENST00000510422 1159 ntBASIC38.22■■■■□ 3.71
MSH6P52701 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC38.22■■■■□ 3.71
MSH6P52701 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC38.22■■■■□ 3.71
MSH6P52701 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC38.21■■■■□ 3.71
MSH6P52701 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC38.21■■■■□ 3.71
MSH6P52701 MIR6090-201ENST00000622481 60 ntBASIC38.2■■■■□ 3.71
MSH6P52701 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
MSH6P52701 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC38.18■■■■□ 3.7
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms