Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
MMP1P03956 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
MMP1P03956 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31.38■■■□□ 2.61
MMP1P03956 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.37■■■□□ 2.61
MMP1P03956 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
MMP1P03956 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.36■■■□□ 2.61
MMP1P03956 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
MMP1P03956 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
MMP1P03956 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.33■■■□□ 2.61
MMP1P03956 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
MMP1P03956 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
MMP1P03956 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
MMP1P03956 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
MMP1P03956 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
MMP1P03956 AL133380.1-201ENST00000506013 324 ntBASIC31.29■■■□□ 2.6
MMP1P03956 RARRES2P7-201ENST00000567349 469 ntBASIC31.29■■■□□ 2.6
MMP1P03956 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
MMP1P03956 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC31.26■■■□□ 2.6
MMP1P03956 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.26■■■□□ 2.59
MMP1P03956 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
MMP1P03956 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
MMP1P03956 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
MMP1P03956 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
MMP1P03956 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.24■■■□□ 2.59
MMP1P03956 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.23■■■□□ 2.59
MMP1P03956 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
MMP1P03956 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
MMP1P03956 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.2■■■□□ 2.59
MMP1P03956 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC31.2■■■□□ 2.59
MMP1P03956 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
MMP1P03956 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.19■■■□□ 2.58
MMP1P03956 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
MMP1P03956 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.17■■■□□ 2.58
MMP1P03956 SETD8P1-201ENST00000623146 1180 ntBASIC31.16■■■□□ 2.58
MMP1P03956 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
MMP1P03956 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
MMP1P03956 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
MMP1P03956 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC31.12■■■□□ 2.57
MMP1P03956 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.11■■■□□ 2.57
MMP1P03956 WASH5P-204ENST00000632292 975 ntBASIC31.11■■■□□ 2.57
MMP1P03956 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.1■■■□□ 2.57
MMP1P03956 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
MMP1P03956 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
MMP1P03956 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
MMP1P03956 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.07■■■□□ 2.56
MMP1P03956 AC097358.2-201ENST00000607541 1159 ntBASIC31.07■■■□□ 2.56
MMP1P03956 AL161658.1-201ENST00000623641 1967 ntBASIC31.05■■■□□ 2.56
MMP1P03956 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
MMP1P03956 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.05■■■□□ 2.56
MMP1P03956 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
MMP1P03956 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC31.05■■■□□ 2.56
MMP1P03956 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.04■■■□□ 2.56
MMP1P03956 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
MMP1P03956 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
MMP1P03956 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
MMP1P03956 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31■■■□□ 2.55
MMP1P03956 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31■■■□□ 2.55
MMP1P03956 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31■■■□□ 2.55
MMP1P03956 AC136428.2-201ENST00000563187 214 ntBASIC31■■■□□ 2.55
MMP1P03956 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31■■■□□ 2.55
MMP1P03956 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
MMP1P03956 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.98■■■□□ 2.55
MMP1P03956 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC30.98■■■□□ 2.55
MMP1P03956 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.98■■■□□ 2.55
MMP1P03956 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
MMP1P03956 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.97■■■□□ 2.55
MMP1P03956 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
MMP1P03956 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
MMP1P03956 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
MMP1P03956 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.95■■■□□ 2.55
MMP1P03956 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
MMP1P03956 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
MMP1P03956 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.91■■■□□ 2.54
MMP1P03956 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
MMP1P03956 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
MMP1P03956 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
MMP1P03956 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC30.89■■■□□ 2.54
MMP1P03956 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
MMP1P03956 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
MMP1P03956 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
MMP1P03956 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
MMP1P03956 SUZ12P1-203ENST00000578195 985 ntBASIC30.88■■■□□ 2.53
MMP1P03956 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC30.88■■■□□ 2.53
MMP1P03956 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.86■■■□□ 2.53
MMP1P03956 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.86■■■□□ 2.53
MMP1P03956 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
MMP1P03956 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
MMP1P03956 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.84■■■□□ 2.53
MMP1P03956 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.84■■■□□ 2.53
MMP1P03956 CAHM-201ENST00000604200 896 ntBASIC30.84■■■□□ 2.53
MMP1P03956 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
MMP1P03956 AL391121.1-201ENST00000607967 1349 ntBASIC30.82■■■□□ 2.52
MMP1P03956 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
MMP1P03956 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC30.82■■■□□ 2.52
MMP1P03956 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
MMP1P03956 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC30.81■■■□□ 2.52
MMP1P03956 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC30.81■■■□□ 2.52
MMP1P03956 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
MMP1P03956 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC30.81■■■□□ 2.52
MMP1P03956 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms