Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC32.15■■■□□ 2.74
PCDHA1Q9Y5I3 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC32.15■■■□□ 2.74
PCDHA1Q9Y5I3 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
PCDHA1Q9Y5I3 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
PCDHA1Q9Y5I3 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
PCDHA1Q9Y5I3 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC32.09■■■□□ 2.73
PCDHA1Q9Y5I3 AC097358.2-201ENST00000607541 1159 ntBASIC32.09■■■□□ 2.73
PCDHA1Q9Y5I3 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC32.08■■■□□ 2.73
PCDHA1Q9Y5I3 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC32.07■■■□□ 2.72
PCDHA1Q9Y5I3 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
PCDHA1Q9Y5I3 AC136428.2-201ENST00000563187 214 ntBASIC32.04■■■□□ 2.72
PCDHA1Q9Y5I3 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
PCDHA1Q9Y5I3 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC32.02■■■□□ 2.72
PCDHA1Q9Y5I3 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC32.01■■■□□ 2.71
PCDHA1Q9Y5I3 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC32.01■■■□□ 2.71
PCDHA1Q9Y5I3 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
PCDHA1Q9Y5I3 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
PCDHA1Q9Y5I3 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
PCDHA1Q9Y5I3 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC31.97■■■□□ 2.71
PCDHA1Q9Y5I3 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.96■■■□□ 2.71
PCDHA1Q9Y5I3 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.95■■■□□ 2.71
PCDHA1Q9Y5I3 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
PCDHA1Q9Y5I3 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
PCDHA1Q9Y5I3 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.94■■■□□ 2.7
PCDHA1Q9Y5I3 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.94■■■□□ 2.7
PCDHA1Q9Y5I3 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
PCDHA1Q9Y5I3 AL133380.1-201ENST00000506013 324 ntBASIC31.92■■■□□ 2.7
PCDHA1Q9Y5I3 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.92■■■□□ 2.7
PCDHA1Q9Y5I3 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
PCDHA1Q9Y5I3 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.91■■■□□ 2.7
PCDHA1Q9Y5I3 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
PCDHA1Q9Y5I3 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
PCDHA1Q9Y5I3 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
PCDHA1Q9Y5I3 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
PCDHA1Q9Y5I3 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.83■■■□□ 2.69
PCDHA1Q9Y5I3 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
PCDHA1Q9Y5I3 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
PCDHA1Q9Y5I3 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.8■■■□□ 2.68
PCDHA1Q9Y5I3 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
PCDHA1Q9Y5I3 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
PCDHA1Q9Y5I3 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.8■■■□□ 2.68
PCDHA1Q9Y5I3 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC31.79■■■□□ 2.68
PCDHA1Q9Y5I3 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31.78■■■□□ 2.68
PCDHA1Q9Y5I3 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.78■■■□□ 2.68
PCDHA1Q9Y5I3 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
PCDHA1Q9Y5I3 CAHM-201ENST00000604200 896 ntBASIC31.77■■■□□ 2.68
PCDHA1Q9Y5I3 SUZ12P1-203ENST00000578195 985 ntBASIC31.76■■■□□ 2.67
PCDHA1Q9Y5I3 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
PCDHA1Q9Y5I3 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.75■■■□□ 2.67
PCDHA1Q9Y5I3 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
PCDHA1Q9Y5I3 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.73■■■□□ 2.67
PCDHA1Q9Y5I3 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC31.72■■■□□ 2.67
PCDHA1Q9Y5I3 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.71■■■□□ 2.67
PCDHA1Q9Y5I3 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.71■■■□□ 2.67
PCDHA1Q9Y5I3 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.71■■■□□ 2.67
PCDHA1Q9Y5I3 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
PCDHA1Q9Y5I3 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.69■■■□□ 2.66
PCDHA1Q9Y5I3 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.68■■■□□ 2.66
PCDHA1Q9Y5I3 AL391121.1-201ENST00000607967 1349 ntBASIC31.68■■■□□ 2.66
PCDHA1Q9Y5I3 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.67■■■□□ 2.66
PCDHA1Q9Y5I3 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC31.67■■■□□ 2.66
PCDHA1Q9Y5I3 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.66■■■□□ 2.66
PCDHA1Q9Y5I3 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
PCDHA1Q9Y5I3 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
PCDHA1Q9Y5I3 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
PCDHA1Q9Y5I3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
PCDHA1Q9Y5I3 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
PCDHA1Q9Y5I3 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.61■■■□□ 2.65
PCDHA1Q9Y5I3 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
PCDHA1Q9Y5I3 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
PCDHA1Q9Y5I3 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
PCDHA1Q9Y5I3 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
PCDHA1Q9Y5I3 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.57■■■□□ 2.65
PCDHA1Q9Y5I3 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
PCDHA1Q9Y5I3 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
PCDHA1Q9Y5I3 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.56■■■□□ 2.64
PCDHA1Q9Y5I3 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
PCDHA1Q9Y5I3 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
PCDHA1Q9Y5I3 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
PCDHA1Q9Y5I3 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31.52■■■□□ 2.64
PCDHA1Q9Y5I3 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC31.52■■■□□ 2.64
PCDHA1Q9Y5I3 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
PCDHA1Q9Y5I3 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.5■■■□□ 2.63
PCDHA1Q9Y5I3 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.49■■■□□ 2.63
PCDHA1Q9Y5I3 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
PCDHA1Q9Y5I3 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31.49■■■□□ 2.63
PCDHA1Q9Y5I3 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.48■■■□□ 2.63
PCDHA1Q9Y5I3 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
PCDHA1Q9Y5I3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
PCDHA1Q9Y5I3 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.46■■■□□ 2.63
PCDHA1Q9Y5I3 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
PCDHA1Q9Y5I3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
PCDHA1Q9Y5I3 WASH5P-204ENST00000632292 975 ntBASIC31.45■■■□□ 2.63
PCDHA1Q9Y5I3 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
PCDHA1Q9Y5I3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.43■■■□□ 2.62
PCDHA1Q9Y5I3 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
PCDHA1Q9Y5I3 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
PCDHA1Q9Y5I3 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
PCDHA1Q9Y5I3 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
PCDHA1Q9Y5I3 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms