Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
CUEDC1Q9NWM3 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CUEDC1Q9NWM3 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CUEDC1Q9NWM3 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.83■■□□□ 1.88
CUEDC1Q9NWM3 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC26.82■■□□□ 1.88
CUEDC1Q9NWM3 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CUEDC1Q9NWM3 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.8■■□□□ 1.88
CUEDC1Q9NWM3 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
CUEDC1Q9NWM3 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC26.79■■□□□ 1.88
CUEDC1Q9NWM3 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
CUEDC1Q9NWM3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CUEDC1Q9NWM3 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CUEDC1Q9NWM3 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
CUEDC1Q9NWM3 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.75■■□□□ 1.87
CUEDC1Q9NWM3 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC26.75■■□□□ 1.87
CUEDC1Q9NWM3 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC26.75■■□□□ 1.87
CUEDC1Q9NWM3 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC26.75■■□□□ 1.87
CUEDC1Q9NWM3 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
CUEDC1Q9NWM3 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC26.74■■□□□ 1.87
CUEDC1Q9NWM3 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC26.73■■□□□ 1.87
CUEDC1Q9NWM3 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
CUEDC1Q9NWM3 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CUEDC1Q9NWM3 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.72■■□□□ 1.87
CUEDC1Q9NWM3 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
CUEDC1Q9NWM3 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
CUEDC1Q9NWM3 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC26.71■■□□□ 1.87
CUEDC1Q9NWM3 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
CUEDC1Q9NWM3 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.7■■□□□ 1.86
CUEDC1Q9NWM3 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CUEDC1Q9NWM3 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC26.7■■□□□ 1.86
CUEDC1Q9NWM3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CUEDC1Q9NWM3 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC26.67■■□□□ 1.86
CUEDC1Q9NWM3 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CUEDC1Q9NWM3 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.66■■□□□ 1.86
CUEDC1Q9NWM3 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.66■■□□□ 1.86
CUEDC1Q9NWM3 KLF16-203ENST00000592313 508 ntTSL 3 BASIC26.65■■□□□ 1.86
CUEDC1Q9NWM3 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CUEDC1Q9NWM3 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
CUEDC1Q9NWM3 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
CUEDC1Q9NWM3 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC26.61■■□□□ 1.85
CUEDC1Q9NWM3 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
CUEDC1Q9NWM3 RARRES2P7-201ENST00000567349 469 ntBASIC26.57■■□□□ 1.84
CUEDC1Q9NWM3 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.56■■□□□ 1.84
CUEDC1Q9NWM3 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
CUEDC1Q9NWM3 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CUEDC1Q9NWM3 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC26.55■■□□□ 1.84
CUEDC1Q9NWM3 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
CUEDC1Q9NWM3 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC26.54■■□□□ 1.84
CUEDC1Q9NWM3 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CUEDC1Q9NWM3 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CUEDC1Q9NWM3 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC26.51■■□□□ 1.83
CUEDC1Q9NWM3 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.51■■□□□ 1.83
CUEDC1Q9NWM3 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC26.5■■□□□ 1.83
CUEDC1Q9NWM3 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC26.5■■□□□ 1.83
CUEDC1Q9NWM3 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
CUEDC1Q9NWM3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CUEDC1Q9NWM3 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.49■■□□□ 1.83
CUEDC1Q9NWM3 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
CUEDC1Q9NWM3 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
CUEDC1Q9NWM3 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
CUEDC1Q9NWM3 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
CUEDC1Q9NWM3 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC26.47■■□□□ 1.83
CUEDC1Q9NWM3 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CUEDC1Q9NWM3 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CUEDC1Q9NWM3 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
CUEDC1Q9NWM3 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
CUEDC1Q9NWM3 SETD8P1-201ENST00000623146 1180 ntBASIC26.44■■□□□ 1.82
CUEDC1Q9NWM3 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CUEDC1Q9NWM3 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC26.43■■□□□ 1.82
CUEDC1Q9NWM3 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CUEDC1Q9NWM3 AC120057.4-201ENST00000624722 1615 ntBASIC26.43■■□□□ 1.82
CUEDC1Q9NWM3 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.42■■□□□ 1.82
CUEDC1Q9NWM3 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CUEDC1Q9NWM3 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
CUEDC1Q9NWM3 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CUEDC1Q9NWM3 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.41■■□□□ 1.82
CUEDC1Q9NWM3 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CUEDC1Q9NWM3 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
CUEDC1Q9NWM3 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CUEDC1Q9NWM3 AL133380.1-201ENST00000506013 324 ntBASIC26.39■■□□□ 1.82
CUEDC1Q9NWM3 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CUEDC1Q9NWM3 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CUEDC1Q9NWM3 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC26.38■■□□□ 1.81
CUEDC1Q9NWM3 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CUEDC1Q9NWM3 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CUEDC1Q9NWM3 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CUEDC1Q9NWM3 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CUEDC1Q9NWM3 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CUEDC1Q9NWM3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CUEDC1Q9NWM3 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CUEDC1Q9NWM3 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CUEDC1Q9NWM3 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
CUEDC1Q9NWM3 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CUEDC1Q9NWM3 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC26.3■■□□□ 1.8
CUEDC1Q9NWM3 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CUEDC1Q9NWM3 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUEDC1Q9NWM3 AC136428.2-201ENST00000563187 214 ntBASIC26.28■■□□□ 1.8
CUEDC1Q9NWM3 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUEDC1Q9NWM3 AC097358.2-201ENST00000607541 1159 ntBASIC26.27■■□□□ 1.8
CUEDC1Q9NWM3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.27■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms