Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
BRF2Q9HAW0 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
BRF2Q9HAW0 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
BRF2Q9HAW0 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
BRF2Q9HAW0 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
BRF2Q9HAW0 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
BRF2Q9HAW0 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC26.65■■□□□ 1.86
BRF2Q9HAW0 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.64■■□□□ 1.85
BRF2Q9HAW0 AP002365.1-201ENST00000603448 772 ntBASIC26.62■■□□□ 1.85
BRF2Q9HAW0 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
BRF2Q9HAW0 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
BRF2Q9HAW0 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
BRF2Q9HAW0 EBPL-203ENST00000378270 579 ntTSL 2 BASIC26.61■■□□□ 1.85
BRF2Q9HAW0 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC26.6■■□□□ 1.85
BRF2Q9HAW0 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
BRF2Q9HAW0 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
BRF2Q9HAW0 AL031258.1-201ENST00000623562 325 ntBASIC26.57■■□□□ 1.84
BRF2Q9HAW0 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
BRF2Q9HAW0 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC26.56■■□□□ 1.84
BRF2Q9HAW0 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC26.56■■□□□ 1.84
BRF2Q9HAW0 ST7-205ENST00000393446 2114 ntTSL 5 BASIC26.56■■□□□ 1.84
BRF2Q9HAW0 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC26.55■■□□□ 1.84
BRF2Q9HAW0 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
BRF2Q9HAW0 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.53■■□□□ 1.84
BRF2Q9HAW0 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
BRF2Q9HAW0 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
BRF2Q9HAW0 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
BRF2Q9HAW0 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
BRF2Q9HAW0 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC26.52■■□□□ 1.84
BRF2Q9HAW0 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
BRF2Q9HAW0 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
BRF2Q9HAW0 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC26.51■■□□□ 1.83
BRF2Q9HAW0 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
BRF2Q9HAW0 ST7-202ENST00000323984 2142 ntTSL 5 BASIC26.49■■□□□ 1.83
BRF2Q9HAW0 ST7-207ENST00000393449 2127 ntTSL 5 BASIC26.49■■□□□ 1.83
BRF2Q9HAW0 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
BRF2Q9HAW0 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC26.49■■□□□ 1.83
BRF2Q9HAW0 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
BRF2Q9HAW0 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
BRF2Q9HAW0 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
BRF2Q9HAW0 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.47■■□□□ 1.83
BRF2Q9HAW0 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
BRF2Q9HAW0 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
BRF2Q9HAW0 AC120057.4-201ENST00000624722 1615 ntBASIC26.46■■□□□ 1.83
BRF2Q9HAW0 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
BRF2Q9HAW0 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC26.44■■□□□ 1.82
BRF2Q9HAW0 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC26.43■■□□□ 1.82
BRF2Q9HAW0 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
BRF2Q9HAW0 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
BRF2Q9HAW0 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC26.42■■□□□ 1.82
BRF2Q9HAW0 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.41■■□□□ 1.82
BRF2Q9HAW0 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC26.41■■□□□ 1.82
BRF2Q9HAW0 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC26.4■■□□□ 1.82
BRF2Q9HAW0 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
BRF2Q9HAW0 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
BRF2Q9HAW0 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC26.35■■□□□ 1.81
BRF2Q9HAW0 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC26.34■■□□□ 1.81
BRF2Q9HAW0 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
BRF2Q9HAW0 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
BRF2Q9HAW0 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC26.31■■□□□ 1.8
BRF2Q9HAW0 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
BRF2Q9HAW0 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
BRF2Q9HAW0 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
BRF2Q9HAW0 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
BRF2Q9HAW0 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
BRF2Q9HAW0 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC26.28■■□□□ 1.8
BRF2Q9HAW0 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
BRF2Q9HAW0 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
BRF2Q9HAW0 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
BRF2Q9HAW0 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
BRF2Q9HAW0 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
BRF2Q9HAW0 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
BRF2Q9HAW0 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
BRF2Q9HAW0 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
BRF2Q9HAW0 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
BRF2Q9HAW0 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
BRF2Q9HAW0 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
BRF2Q9HAW0 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC26.21■■□□□ 1.79
BRF2Q9HAW0 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
BRF2Q9HAW0 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
BRF2Q9HAW0 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
BRF2Q9HAW0 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.18■■□□□ 1.78
BRF2Q9HAW0 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.18■■□□□ 1.78
BRF2Q9HAW0 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
BRF2Q9HAW0 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
BRF2Q9HAW0 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC26.18■■□□□ 1.78
BRF2Q9HAW0 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
BRF2Q9HAW0 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
BRF2Q9HAW0 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
BRF2Q9HAW0 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
BRF2Q9HAW0 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.16■■□□□ 1.78
BRF2Q9HAW0 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
BRF2Q9HAW0 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
BRF2Q9HAW0 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC26.13■■□□□ 1.77
BRF2Q9HAW0 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
BRF2Q9HAW0 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
BRF2Q9HAW0 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC26.11■■□□□ 1.77
BRF2Q9HAW0 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
BRF2Q9HAW0 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC26.1■■□□□ 1.77
BRF2Q9HAW0 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms