Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC30.42■■■□□ 2.46
CDT1Q9H211 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.42■■■□□ 2.46
CDT1Q9H211 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CDT1Q9H211 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.4■■■□□ 2.46
CDT1Q9H211 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
CDT1Q9H211 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.37■■■□□ 2.45
CDT1Q9H211 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC30.37■■■□□ 2.45
CDT1Q9H211 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CDT1Q9H211 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CDT1Q9H211 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.34■■■□□ 2.45
CDT1Q9H211 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CDT1Q9H211 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CDT1Q9H211 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CDT1Q9H211 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CDT1Q9H211 AC136428.2-201ENST00000563187 214 ntBASIC30.32■■■□□ 2.44
CDT1Q9H211 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.32■■■□□ 2.44
CDT1Q9H211 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.31■■■□□ 2.44
CDT1Q9H211 AC097358.2-201ENST00000607541 1159 ntBASIC30.31■■■□□ 2.44
CDT1Q9H211 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC30.27■■■□□ 2.44
CDT1Q9H211 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
CDT1Q9H211 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CDT1Q9H211 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC30.23■■■□□ 2.43
CDT1Q9H211 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CDT1Q9H211 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
CDT1Q9H211 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CDT1Q9H211 AL133380.1-201ENST00000506013 324 ntBASIC30.21■■■□□ 2.43
CDT1Q9H211 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.21■■■□□ 2.43
CDT1Q9H211 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
CDT1Q9H211 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
CDT1Q9H211 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.18■■■□□ 2.42
CDT1Q9H211 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC30.18■■■□□ 2.42
CDT1Q9H211 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CDT1Q9H211 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
CDT1Q9H211 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC30.16■■■□□ 2.42
CDT1Q9H211 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CDT1Q9H211 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.13■■■□□ 2.41
CDT1Q9H211 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
CDT1Q9H211 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CDT1Q9H211 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CDT1Q9H211 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC30.11■■■□□ 2.41
CDT1Q9H211 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.1■■■□□ 2.41
CDT1Q9H211 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.08■■■□□ 2.41
CDT1Q9H211 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.08■■■□□ 2.41
CDT1Q9H211 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.07■■■□□ 2.41
CDT1Q9H211 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
CDT1Q9H211 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.05■■■□□ 2.4
CDT1Q9H211 SUZ12P1-203ENST00000578195 985 ntBASIC30.05■■■□□ 2.4
CDT1Q9H211 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CDT1Q9H211 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CDT1Q9H211 CAHM-201ENST00000604200 896 ntBASIC30.04■■■□□ 2.4
CDT1Q9H211 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.04■■■□□ 2.4
CDT1Q9H211 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC30.04■■■□□ 2.4
CDT1Q9H211 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.01■■■□□ 2.39
CDT1Q9H211 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.01■■■□□ 2.39
CDT1Q9H211 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30■■■□□ 2.39
CDT1Q9H211 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30■■■□□ 2.39
CDT1Q9H211 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
CDT1Q9H211 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC29.99■■■□□ 2.39
CDT1Q9H211 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC29.98■■■□□ 2.39
CDT1Q9H211 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
CDT1Q9H211 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC29.97■■■□□ 2.39
CDT1Q9H211 AL391121.1-201ENST00000607967 1349 ntBASIC29.96■■■□□ 2.39
CDT1Q9H211 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
CDT1Q9H211 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC29.96■■■□□ 2.39
CDT1Q9H211 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
CDT1Q9H211 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
CDT1Q9H211 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC29.93■■■□□ 2.38
CDT1Q9H211 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
CDT1Q9H211 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
CDT1Q9H211 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.92■■■□□ 2.38
CDT1Q9H211 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
CDT1Q9H211 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC29.91■■■□□ 2.38
CDT1Q9H211 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
CDT1Q9H211 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC29.9■■■□□ 2.38
CDT1Q9H211 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
CDT1Q9H211 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
CDT1Q9H211 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC29.89■■■□□ 2.37
CDT1Q9H211 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CDT1Q9H211 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CDT1Q9H211 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CDT1Q9H211 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CDT1Q9H211 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
CDT1Q9H211 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC29.84■■■□□ 2.37
CDT1Q9H211 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
CDT1Q9H211 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CDT1Q9H211 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
CDT1Q9H211 EBPL-202ENST00000378268 680 ntTSL 3 BASIC29.8■■■□□ 2.36
CDT1Q9H211 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CDT1Q9H211 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CDT1Q9H211 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
CDT1Q9H211 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC29.78■■■□□ 2.36
CDT1Q9H211 WASH5P-204ENST00000632292 975 ntBASIC29.78■■■□□ 2.36
CDT1Q9H211 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC29.77■■■□□ 2.36
CDT1Q9H211 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC29.76■■■□□ 2.35
CDT1Q9H211 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CDT1Q9H211 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CDT1Q9H211 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC29.73■■■□□ 2.35
CDT1Q9H211 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
CDT1Q9H211 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
CDT1Q9H211 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms