Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM3Q8TF72 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC28.52■■■□□ 2.16
SHROOM3Q8TF72 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHROOM3Q8TF72 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
SHROOM3Q8TF72 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC28.47■■■□□ 2.15
SHROOM3Q8TF72 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
SHROOM3Q8TF72 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC28.47■■■□□ 2.15
SHROOM3Q8TF72 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
SHROOM3Q8TF72 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
SHROOM3Q8TF72 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC28.46■■■□□ 2.15
SHROOM3Q8TF72 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC28.45■■■□□ 2.14
SHROOM3Q8TF72 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM3Q8TF72 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
SHROOM3Q8TF72 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC28.44■■■□□ 2.14
SHROOM3Q8TF72 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC28.43■■■□□ 2.14
SHROOM3Q8TF72 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC28.41■■■□□ 2.14
SHROOM3Q8TF72 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC28.41■■■□□ 2.14
SHROOM3Q8TF72 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
SHROOM3Q8TF72 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC28.4■■■□□ 2.14
SHROOM3Q8TF72 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC28.39■■■□□ 2.13
SHROOM3Q8TF72 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC28.38■■■□□ 2.13
SHROOM3Q8TF72 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
SHROOM3Q8TF72 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC28.37■■■□□ 2.13
SHROOM3Q8TF72 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC28.36■■■□□ 2.13
SHROOM3Q8TF72 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SHROOM3Q8TF72 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
SHROOM3Q8TF72 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM3Q8TF72 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.12
SHROOM3Q8TF72 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC28.32■■■□□ 2.12
SHROOM3Q8TF72 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC28.3■■■□□ 2.12
SHROOM3Q8TF72 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM3Q8TF72 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
SHROOM3Q8TF72 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM3Q8TF72 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
SHROOM3Q8TF72 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SHROOM3Q8TF72 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SHROOM3Q8TF72 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
SHROOM3Q8TF72 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SHROOM3Q8TF72 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC28.24■■■□□ 2.11
SHROOM3Q8TF72 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
SHROOM3Q8TF72 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
SHROOM3Q8TF72 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC28.22■■■□□ 2.11
SHROOM3Q8TF72 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC28.22■■■□□ 2.11
SHROOM3Q8TF72 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC28.21■■■□□ 2.11
SHROOM3Q8TF72 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC28.2■■■□□ 2.11
SHROOM3Q8TF72 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC28.19■■■□□ 2.1
SHROOM3Q8TF72 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM3Q8TF72 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM3Q8TF72 AC120057.4-201ENST00000624722 1615 ntBASIC28.17■■■□□ 2.1
SHROOM3Q8TF72 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM3Q8TF72 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC28.17■■■□□ 2.1
SHROOM3Q8TF72 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM3Q8TF72 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM3Q8TF72 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC28.15■■■□□ 2.1
SHROOM3Q8TF72 RARRES2P7-201ENST00000567349 469 ntBASIC28.14■■■□□ 2.1
SHROOM3Q8TF72 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SHROOM3Q8TF72 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC28.13■■■□□ 2.09
SHROOM3Q8TF72 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SHROOM3Q8TF72 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC28.13■■■□□ 2.09
SHROOM3Q8TF72 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM3Q8TF72 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM3Q8TF72 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM3Q8TF72 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
SHROOM3Q8TF72 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SHROOM3Q8TF72 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC28.1■■■□□ 2.09
SHROOM3Q8TF72 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHROOM3Q8TF72 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SHROOM3Q8TF72 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SHROOM3Q8TF72 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC28.08■■■□□ 2.09
SHROOM3Q8TF72 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
SHROOM3Q8TF72 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC28.08■■■□□ 2.09
SHROOM3Q8TF72 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
SHROOM3Q8TF72 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC28.04■■■□□ 2.08
SHROOM3Q8TF72 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM3Q8TF72 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM3Q8TF72 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM3Q8TF72 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM3Q8TF72 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC28.01■■■□□ 2.08
SHROOM3Q8TF72 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM3Q8TF72 KLF16-203ENST00000592313 508 ntTSL 3 BASIC28.01■■■□□ 2.07
SHROOM3Q8TF72 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC28■■■□□ 2.07
SHROOM3Q8TF72 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC28■■■□□ 2.07
SHROOM3Q8TF72 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC27.99■■■□□ 2.07
SHROOM3Q8TF72 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
SHROOM3Q8TF72 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC27.99■■■□□ 2.07
SHROOM3Q8TF72 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC27.97■■■□□ 2.07
SHROOM3Q8TF72 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM3Q8TF72 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC27.96■■■□□ 2.07
SHROOM3Q8TF72 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC27.96■■■□□ 2.07
SHROOM3Q8TF72 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC27.96■■■□□ 2.07
SHROOM3Q8TF72 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC27.96■■■□□ 2.07
SHROOM3Q8TF72 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC27.96■■■□□ 2.07
SHROOM3Q8TF72 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM3Q8TF72 AL133380.1-201ENST00000506013 324 ntBASIC27.93■■■□□ 2.06
SHROOM3Q8TF72 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC27.92■■■□□ 2.06
SHROOM3Q8TF72 SETD8P1-201ENST00000623146 1180 ntBASIC27.92■■■□□ 2.06
SHROOM3Q8TF72 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC27.91■■■□□ 2.06
SHROOM3Q8TF72 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM3Q8TF72 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
SHROOM3Q8TF72 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC27.91■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms