Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC087741.3-201ENST00000624270 1347 ntBASIC18.12■□□□□ 0.49
HSPG2P98160 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC18.12■□□□□ 0.49
HSPG2P98160 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HSPG2P98160 DUX4L28-201ENST00000623687 678 ntBASIC18.11■□□□□ 0.49
HSPG2P98160 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC18.1■□□□□ 0.49
HSPG2P98160 AC145285.7-201ENST00000614819 1539 ntBASIC18.1■□□□□ 0.49
HSPG2P98160 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC18.07■□□□□ 0.48
HSPG2P98160 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
HSPG2P98160 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC18.07■□□□□ 0.48
HSPG2P98160 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HSPG2P98160 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC18.06■□□□□ 0.48
HSPG2P98160 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HSPG2P98160 RPS2-202ENST00000526522 924 ntTSL 2 BASIC18.04■□□□□ 0.48
HSPG2P98160 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC18.03■□□□□ 0.48
HSPG2P98160 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC18.02■□□□□ 0.47
HSPG2P98160 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC18.01■□□□□ 0.47
HSPG2P98160 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HSPG2P98160 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HSPG2P98160 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
HSPG2P98160 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
HSPG2P98160 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HSPG2P98160 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HSPG2P98160 AL133380.1-201ENST00000506013 324 ntBASIC17.98■□□□□ 0.47
HSPG2P98160 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC17.98■□□□□ 0.47
HSPG2P98160 MIR762-201ENST00000390236 83 ntBASIC17.97■□□□□ 0.47
HSPG2P98160 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HSPG2P98160 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
HSPG2P98160 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC17.95■□□□□ 0.46
HSPG2P98160 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC17.95■□□□□ 0.46
HSPG2P98160 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HSPG2P98160 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC17.95■□□□□ 0.46
HSPG2P98160 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HSPG2P98160 MIR4449-201ENST00000578365 66 ntBASIC17.94■□□□□ 0.46
HSPG2P98160 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC17.94■□□□□ 0.46
HSPG2P98160 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
HSPG2P98160 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC17.93■□□□□ 0.46
HSPG2P98160 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC17.92■□□□□ 0.46
HSPG2P98160 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HSPG2P98160 AC044849.2-201ENST00000606596 710 ntBASIC17.92■□□□□ 0.46
HSPG2P98160 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HSPG2P98160 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HSPG2P98160 EBPL-202ENST00000378268 680 ntTSL 3 BASIC17.9■□□□□ 0.46
HSPG2P98160 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC17.9■□□□□ 0.46
HSPG2P98160 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HSPG2P98160 HSD17B1P1-201ENST00000590052 955 ntBASIC17.89■□□□□ 0.46
HSPG2P98160 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC17.89■□□□□ 0.45
HSPG2P98160 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HSPG2P98160 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
HSPG2P98160 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
HSPG2P98160 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC17.86■□□□□ 0.45
HSPG2P98160 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HSPG2P98160 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HSPG2P98160 AC005559.1-201ENST00000589661 871 ntBASIC17.84■□□□□ 0.45
HSPG2P98160 CHML-205ENST00000638160 705 ntTSL 3 BASIC17.83■□□□□ 0.45
HSPG2P98160 HGH1-207ENST00000628266 258 ntTSL 5 BASIC17.82■□□□□ 0.44
HSPG2P98160 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HSPG2P98160 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HSPG2P98160 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC17.81■□□□□ 0.44
HSPG2P98160 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HSPG2P98160 ZNRF2P2-203ENST00000454624 420 ntBASIC17.81■□□□□ 0.44
HSPG2P98160 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC17.8■□□□□ 0.44
HSPG2P98160 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HSPG2P98160 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC17.8■□□□□ 0.44
HSPG2P98160 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
HSPG2P98160 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HSPG2P98160 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HSPG2P98160 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HSPG2P98160 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
HSPG2P98160 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC17.76■□□□□ 0.43
HSPG2P98160 MIR639-201ENST00000384974 98 ntBASIC17.75■□□□□ 0.43
HSPG2P98160 MACF1-219ENST00000484793 834 ntTSL 2 BASIC17.75■□□□□ 0.43
HSPG2P98160 MVK-208ENST00000539696 608 ntTSL 5 BASIC17.74■□□□□ 0.43
HSPG2P98160 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
HSPG2P98160 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC17.72■□□□□ 0.43
HSPG2P98160 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HSPG2P98160 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HSPG2P98160 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HSPG2P98160 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HSPG2P98160 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HSPG2P98160 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HSPG2P98160 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HSPG2P98160 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC17.69■□□□□ 0.42
HSPG2P98160 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC17.68■□□□□ 0.42
HSPG2P98160 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
HSPG2P98160 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC17.67■□□□□ 0.42
HSPG2P98160 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HSPG2P98160 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HSPG2P98160 BOD1-206ENST00000480951 814 ntTSL 2 BASIC17.66■□□□□ 0.42
HSPG2P98160 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC17.66■□□□□ 0.42
HSPG2P98160 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
HSPG2P98160 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC17.65■□□□□ 0.42
HSPG2P98160 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC17.64■□□□□ 0.41
HSPG2P98160 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC17.63■□□□□ 0.41
HSPG2P98160 DENR-202ENST00000455982 1052 ntTSL 5 BASIC17.63■□□□□ 0.41
HSPG2P98160 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HSPG2P98160 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
HSPG2P98160 CALM3-209ENST00000597743 577 ntTSL 4 BASIC17.62■□□□□ 0.41
HSPG2P98160 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HSPG2P98160 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
HSPG2P98160 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms