Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC32.4■■■□□ 2.78
CDKL5O76039 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC32.4■■■□□ 2.78
CDKL5O76039 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
CDKL5O76039 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC32.35■■■□□ 2.77
CDKL5O76039 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
CDKL5O76039 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC32.34■■■□□ 2.77
CDKL5O76039 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC32.33■■■□□ 2.77
CDKL5O76039 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC32.33■■■□□ 2.77
CDKL5O76039 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.77
CDKL5O76039 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC32.32■■■□□ 2.76
CDKL5O76039 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
CDKL5O76039 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC32.32■■■□□ 2.76
CDKL5O76039 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC32.29■■■□□ 2.76
CDKL5O76039 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC32.29■■■□□ 2.76
CDKL5O76039 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC32.29■■■□□ 2.76
CDKL5O76039 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
CDKL5O76039 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC32.27■■■□□ 2.76
CDKL5O76039 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
CDKL5O76039 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC32.26■■■□□ 2.76
CDKL5O76039 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC32.26■■■□□ 2.75
CDKL5O76039 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
CDKL5O76039 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
CDKL5O76039 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
CDKL5O76039 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC32.22■■■□□ 2.75
CDKL5O76039 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
CDKL5O76039 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
CDKL5O76039 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
CDKL5O76039 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CDKL5O76039 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC32.16■■■□□ 2.74
CDKL5O76039 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC32.15■■■□□ 2.74
CDKL5O76039 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC32.15■■■□□ 2.74
CDKL5O76039 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC32.15■■■□□ 2.74
CDKL5O76039 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
CDKL5O76039 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC32.13■■■□□ 2.73
CDKL5O76039 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC32.12■■■□□ 2.73
CDKL5O76039 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC32.11■■■□□ 2.73
CDKL5O76039 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC32.11■■■□□ 2.73
CDKL5O76039 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC32.11■■■□□ 2.73
CDKL5O76039 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC32.09■■■□□ 2.73
CDKL5O76039 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
CDKL5O76039 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
CDKL5O76039 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
CDKL5O76039 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
CDKL5O76039 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
CDKL5O76039 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
CDKL5O76039 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
CDKL5O76039 AC120057.4-201ENST00000624722 1615 ntBASIC32.05■■■□□ 2.72
CDKL5O76039 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC32.05■■■□□ 2.72
CDKL5O76039 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC32.04■■■□□ 2.72
CDKL5O76039 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC32.04■■■□□ 2.72
CDKL5O76039 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC32.03■■■□□ 2.72
CDKL5O76039 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC32.02■■■□□ 2.72
CDKL5O76039 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
CDKL5O76039 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
CDKL5O76039 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
CDKL5O76039 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CDKL5O76039 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CDKL5O76039 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CDKL5O76039 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC31.98■■■□□ 2.71
CDKL5O76039 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CDKL5O76039 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
CDKL5O76039 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.95■■■□□ 2.71
CDKL5O76039 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.94■■■□□ 2.7
CDKL5O76039 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CDKL5O76039 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.7
CDKL5O76039 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
CDKL5O76039 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.92■■■□□ 2.7
CDKL5O76039 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
CDKL5O76039 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.9■■■□□ 2.7
CDKL5O76039 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.89■■■□□ 2.7
CDKL5O76039 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
CDKL5O76039 ST7-205ENST00000393446 2114 ntTSL 5 BASIC31.88■■■□□ 2.69
CDKL5O76039 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
CDKL5O76039 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.87■■■□□ 2.69
CDKL5O76039 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
CDKL5O76039 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.85■■■□□ 2.69
CDKL5O76039 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
CDKL5O76039 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
CDKL5O76039 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.82■■■□□ 2.68
CDKL5O76039 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.82■■■□□ 2.68
CDKL5O76039 ST7-202ENST00000323984 2142 ntTSL 5 BASIC31.79■■■□□ 2.68
CDKL5O76039 ST7-207ENST00000393449 2127 ntTSL 5 BASIC31.79■■■□□ 2.68
CDKL5O76039 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CDKL5O76039 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
CDKL5O76039 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.76■■■□□ 2.67
CDKL5O76039 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC31.75■■■□□ 2.67
CDKL5O76039 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.73■■■□□ 2.67
CDKL5O76039 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC31.73■■■□□ 2.67
CDKL5O76039 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CDKL5O76039 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
CDKL5O76039 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.71■■■□□ 2.67
CDKL5O76039 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.7■■■□□ 2.67
CDKL5O76039 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CDKL5O76039 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
CDKL5O76039 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CDKL5O76039 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CDKL5O76039 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC31.65■■■□□ 2.66
CDKL5O76039 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.64■■■□□ 2.66
CDKL5O76039 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CDKL5O76039 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms