Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC35.56■■■■□ 3.28
CACNA1FO60840 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC35.55■■■■□ 3.28
CACNA1FO60840 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC35.54■■■■□ 3.28
CACNA1FO60840 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
CACNA1FO60840 AC136428.2-201ENST00000563187 214 ntBASIC35.51■■■■□ 3.27
CACNA1FO60840 SETD8P1-201ENST00000623146 1180 ntBASIC35.51■■■■□ 3.27
CACNA1FO60840 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
CACNA1FO60840 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
CACNA1FO60840 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC35.48■■■■□ 3.27
CACNA1FO60840 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC35.47■■■■□ 3.27
CACNA1FO60840 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
CACNA1FO60840 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC35.46■■■■□ 3.27
CACNA1FO60840 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC35.46■■■■□ 3.27
CACNA1FO60840 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC35.42■■■■□ 3.26
CACNA1FO60840 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC35.4■■■■□ 3.26
CACNA1FO60840 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
CACNA1FO60840 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
CACNA1FO60840 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC35.39■■■■□ 3.26
CACNA1FO60840 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC35.39■■■■□ 3.26
CACNA1FO60840 AL133380.1-201ENST00000506013 324 ntBASIC35.39■■■■□ 3.26
CACNA1FO60840 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
CACNA1FO60840 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC35.37■■■■□ 3.25
CACNA1FO60840 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC35.36■■■■□ 3.25
CACNA1FO60840 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC35.36■■■■□ 3.25
CACNA1FO60840 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
CACNA1FO60840 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC35.35■■■■□ 3.25
CACNA1FO60840 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC35.33■■■■□ 3.25
CACNA1FO60840 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
CACNA1FO60840 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC35.31■■■■□ 3.24
CACNA1FO60840 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
CACNA1FO60840 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC35.3■■■■□ 3.24
CACNA1FO60840 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC35.3■■■■□ 3.24
CACNA1FO60840 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
CACNA1FO60840 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC35.29■■■■□ 3.24
CACNA1FO60840 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC35.29■■■■□ 3.24
CACNA1FO60840 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
CACNA1FO60840 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC35.28■■■■□ 3.24
CACNA1FO60840 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC35.25■■■■□ 3.23
CACNA1FO60840 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
CACNA1FO60840 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
CACNA1FO60840 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
CACNA1FO60840 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC35.21■■■■□ 3.23
CACNA1FO60840 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC35.21■■■■□ 3.23
CACNA1FO60840 AC097358.2-201ENST00000607541 1159 ntBASIC35.2■■■■□ 3.23
CACNA1FO60840 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC35.19■■■■□ 3.22
CACNA1FO60840 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC35.19■■■■□ 3.22
CACNA1FO60840 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC35.19■■■■□ 3.22
CACNA1FO60840 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC35.17■■■■□ 3.22
CACNA1FO60840 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
CACNA1FO60840 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC35.17■■■■□ 3.22
CACNA1FO60840 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
CACNA1FO60840 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
CACNA1FO60840 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC35.14■■■■□ 3.22
CACNA1FO60840 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC35.12■■■■□ 3.21
CACNA1FO60840 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC35.11■■■■□ 3.21
CACNA1FO60840 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
CACNA1FO60840 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC35.11■■■■□ 3.21
CACNA1FO60840 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC35.1■■■■□ 3.21
CACNA1FO60840 SUZ12P1-203ENST00000578195 985 ntBASIC35.09■■■■□ 3.21
CACNA1FO60840 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC35.07■■■■□ 3.21
CACNA1FO60840 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC35.06■■■■□ 3.2
CACNA1FO60840 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC35.05■■■■□ 3.2
CACNA1FO60840 AL391121.1-201ENST00000607967 1349 ntBASIC35.03■■■■□ 3.2
CACNA1FO60840 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
CACNA1FO60840 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
CACNA1FO60840 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC35.02■■■■□ 3.2
CACNA1FO60840 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
CACNA1FO60840 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
CACNA1FO60840 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC35■■■■□ 3.19
CACNA1FO60840 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
CACNA1FO60840 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
CACNA1FO60840 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
CACNA1FO60840 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
CACNA1FO60840 AC120057.4-201ENST00000624722 1615 ntBASIC34.97■■■■□ 3.19
CACNA1FO60840 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC34.96■■■■□ 3.19
CACNA1FO60840 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC34.96■■■■□ 3.19
CACNA1FO60840 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC34.96■■■■□ 3.19
CACNA1FO60840 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC34.96■■■■□ 3.19
CACNA1FO60840 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC34.96■■■■□ 3.19
CACNA1FO60840 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC34.95■■■■□ 3.19
CACNA1FO60840 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC34.94■■■■□ 3.18
CACNA1FO60840 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC34.93■■■■□ 3.18
CACNA1FO60840 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
CACNA1FO60840 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC34.92■■■■□ 3.18
CACNA1FO60840 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
CACNA1FO60840 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
CACNA1FO60840 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
CACNA1FO60840 HNRNPLP2-201ENST00000568980 1570 ntBASIC34.86■■■■□ 3.17
CACNA1FO60840 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
CACNA1FO60840 CAHM-201ENST00000604200 896 ntBASIC34.85■■■■□ 3.17
CACNA1FO60840 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
CACNA1FO60840 WASH5P-204ENST00000632292 975 ntBASIC34.83■■■■□ 3.17
CACNA1FO60840 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
CACNA1FO60840 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC34.82■■■■□ 3.16
CACNA1FO60840 EBPL-202ENST00000378268 680 ntTSL 3 BASIC34.82■■■■□ 3.16
CACNA1FO60840 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC34.81■■■■□ 3.16
CACNA1FO60840 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC34.8■■■■□ 3.16
CACNA1FO60840 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
CACNA1FO60840 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
CACNA1FO60840 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms