Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
KDM3AQ9Y4C1 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC32.63■■■□□ 2.81
KDM3AQ9Y4C1 AC145285.7-201ENST00000614819 1539 ntBASIC32.62■■■□□ 2.81
KDM3AQ9Y4C1 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC32.61■■■□□ 2.81
KDM3AQ9Y4C1 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
KDM3AQ9Y4C1 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
KDM3AQ9Y4C1 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC32.58■■■□□ 2.81
KDM3AQ9Y4C1 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC32.55■■■□□ 2.8
KDM3AQ9Y4C1 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC32.54■■■□□ 2.8
KDM3AQ9Y4C1 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
KDM3AQ9Y4C1 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
KDM3AQ9Y4C1 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC32.54■■■□□ 2.8
KDM3AQ9Y4C1 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC32.51■■■□□ 2.79
KDM3AQ9Y4C1 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC32.5■■■□□ 2.79
KDM3AQ9Y4C1 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC32.46■■■□□ 2.79
KDM3AQ9Y4C1 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC32.44■■■□□ 2.78
KDM3AQ9Y4C1 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC32.43■■■□□ 2.78
KDM3AQ9Y4C1 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC32.43■■■□□ 2.78
KDM3AQ9Y4C1 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
KDM3AQ9Y4C1 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC32.38■■■□□ 2.77
KDM3AQ9Y4C1 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
KDM3AQ9Y4C1 DYNLL1-208ENST00000550178 581 ntBASIC32.35■■■□□ 2.77
KDM3AQ9Y4C1 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC32.34■■■□□ 2.77
KDM3AQ9Y4C1 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC32.33■■■□□ 2.77
KDM3AQ9Y4C1 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
KDM3AQ9Y4C1 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC32.28■■■□□ 2.76
KDM3AQ9Y4C1 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
KDM3AQ9Y4C1 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
KDM3AQ9Y4C1 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC32.23■■■□□ 2.75
KDM3AQ9Y4C1 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
KDM3AQ9Y4C1 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
KDM3AQ9Y4C1 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC32.21■■■□□ 2.75
KDM3AQ9Y4C1 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC32.2■■■□□ 2.75
KDM3AQ9Y4C1 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
KDM3AQ9Y4C1 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC32.16■■■□□ 2.74
KDM3AQ9Y4C1 AL031258.1-201ENST00000623562 325 ntBASIC32.15■■■□□ 2.74
KDM3AQ9Y4C1 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC32.13■■■□□ 2.73
KDM3AQ9Y4C1 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC32.13■■■□□ 2.73
KDM3AQ9Y4C1 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC32.12■■■□□ 2.73
KDM3AQ9Y4C1 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC32.12■■■□□ 2.73
KDM3AQ9Y4C1 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
KDM3AQ9Y4C1 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC32.08■■■□□ 2.73
KDM3AQ9Y4C1 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
KDM3AQ9Y4C1 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
KDM3AQ9Y4C1 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC32.03■■■□□ 2.72
KDM3AQ9Y4C1 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.99■■■□□ 2.71
KDM3AQ9Y4C1 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC31.99■■■□□ 2.71
KDM3AQ9Y4C1 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.97■■■□□ 2.71
KDM3AQ9Y4C1 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.91■■■□□ 2.7
KDM3AQ9Y4C1 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
KDM3AQ9Y4C1 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
KDM3AQ9Y4C1 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC31.9■■■□□ 2.7
KDM3AQ9Y4C1 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.9■■■□□ 2.7
KDM3AQ9Y4C1 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.9■■■□□ 2.7
KDM3AQ9Y4C1 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
KDM3AQ9Y4C1 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC31.87■■■□□ 2.69
KDM3AQ9Y4C1 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
KDM3AQ9Y4C1 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
KDM3AQ9Y4C1 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
KDM3AQ9Y4C1 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
KDM3AQ9Y4C1 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.81■■■□□ 2.68
KDM3AQ9Y4C1 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
KDM3AQ9Y4C1 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
KDM3AQ9Y4C1 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.78■■■□□ 2.68
KDM3AQ9Y4C1 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
KDM3AQ9Y4C1 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
KDM3AQ9Y4C1 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.77■■■□□ 2.68
KDM3AQ9Y4C1 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.75■■■□□ 2.67
KDM3AQ9Y4C1 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
KDM3AQ9Y4C1 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC31.74■■■□□ 2.67
KDM3AQ9Y4C1 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.74■■■□□ 2.67
KDM3AQ9Y4C1 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
KDM3AQ9Y4C1 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.72■■■□□ 2.67
KDM3AQ9Y4C1 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
KDM3AQ9Y4C1 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
KDM3AQ9Y4C1 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.7■■■□□ 2.66
KDM3AQ9Y4C1 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
KDM3AQ9Y4C1 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
KDM3AQ9Y4C1 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
KDM3AQ9Y4C1 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
KDM3AQ9Y4C1 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
KDM3AQ9Y4C1 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.61■■■□□ 2.65
KDM3AQ9Y4C1 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
KDM3AQ9Y4C1 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
KDM3AQ9Y4C1 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.6■■■□□ 2.65
KDM3AQ9Y4C1 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.6■■■□□ 2.65
KDM3AQ9Y4C1 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.59■■■□□ 2.65
KDM3AQ9Y4C1 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
KDM3AQ9Y4C1 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
KDM3AQ9Y4C1 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
KDM3AQ9Y4C1 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.56■■■□□ 2.64
KDM3AQ9Y4C1 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.55■■■□□ 2.64
KDM3AQ9Y4C1 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.55■■■□□ 2.64
KDM3AQ9Y4C1 RARRES2P7-201ENST00000567349 469 ntBASIC31.52■■■□□ 2.64
KDM3AQ9Y4C1 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.52■■■□□ 2.64
KDM3AQ9Y4C1 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.51■■■□□ 2.64
KDM3AQ9Y4C1 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
KDM3AQ9Y4C1 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC31.46■■■□□ 2.63
KDM3AQ9Y4C1 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
KDM3AQ9Y4C1 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.44■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms