Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC38.23■■■■□ 3.71
KDM3AQ9Y4C1 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC37.91■■■■□ 3.66
KDM3AQ9Y4C1 AL356512.1-201ENST00000607453 1739 ntBASIC37.33■■■■□ 3.57
KDM3AQ9Y4C1 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC37.32■■■■□ 3.56
KDM3AQ9Y4C1 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC37.26■■■■□ 3.55
KDM3AQ9Y4C1 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC37.04■■■■□ 3.52
KDM3AQ9Y4C1 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC37.04■■■■□ 3.52
KDM3AQ9Y4C1 HES6-203ENST00000409160 1600 ntTSL 2 BASIC36.92■■■■□ 3.5
KDM3AQ9Y4C1 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC36.7■■■■□ 3.47
KDM3AQ9Y4C1 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC36.53■■■■□ 3.44
KDM3AQ9Y4C1 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC36.44■■■■□ 3.42
KDM3AQ9Y4C1 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC36.32■■■■□ 3.4
KDM3AQ9Y4C1 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC36.22■■■■□ 3.39
KDM3AQ9Y4C1 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC35.8■■■■□ 3.32
KDM3AQ9Y4C1 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.32
KDM3AQ9Y4C1 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC35.75■■■■□ 3.31
KDM3AQ9Y4C1 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC35.6■■■■□ 3.29
KDM3AQ9Y4C1 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC35.53■■■■□ 3.28
KDM3AQ9Y4C1 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC35.5■■■■□ 3.27
KDM3AQ9Y4C1 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC35.23■■■■□ 3.23
KDM3AQ9Y4C1 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC35.2■■■■□ 3.23
KDM3AQ9Y4C1 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC35.1■■■■□ 3.21
KDM3AQ9Y4C1 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC35.05■■■■□ 3.2
KDM3AQ9Y4C1 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC35.05■■■■□ 3.2
KDM3AQ9Y4C1 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC35.02■■■■□ 3.2
KDM3AQ9Y4C1 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC34.96■■■■□ 3.19
KDM3AQ9Y4C1 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
KDM3AQ9Y4C1 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC34.93■■■■□ 3.18
KDM3AQ9Y4C1 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC34.84■■■■□ 3.17
KDM3AQ9Y4C1 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC34.7■■■■□ 3.15
KDM3AQ9Y4C1 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
KDM3AQ9Y4C1 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC34.64■■■■□ 3.14
KDM3AQ9Y4C1 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
KDM3AQ9Y4C1 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC34.56■■■■□ 3.12
KDM3AQ9Y4C1 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
KDM3AQ9Y4C1 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
KDM3AQ9Y4C1 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
KDM3AQ9Y4C1 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC34.46■■■■□ 3.11
KDM3AQ9Y4C1 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC34.42■■■■□ 3.1
KDM3AQ9Y4C1 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC34.34■■■■□ 3.09
KDM3AQ9Y4C1 INO80B-203ENST00000409917 796 ntTSL 2 BASIC34.3■■■■□ 3.08
KDM3AQ9Y4C1 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC34.28■■■■□ 3.08
KDM3AQ9Y4C1 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
KDM3AQ9Y4C1 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC34.19■■■■□ 3.06
KDM3AQ9Y4C1 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
KDM3AQ9Y4C1 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC34.17■■■■□ 3.06
KDM3AQ9Y4C1 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC34.16■■■■□ 3.06
KDM3AQ9Y4C1 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
KDM3AQ9Y4C1 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
KDM3AQ9Y4C1 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC33.89■■■■□ 3.02
KDM3AQ9Y4C1 AC015813.7-201ENST00000623294 581 ntBASIC33.88■■■■□ 3.01
KDM3AQ9Y4C1 AC006077.2-201ENST00000623591 457 ntBASIC33.83■■■■□ 3.01
KDM3AQ9Y4C1 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC33.82■■■■□ 3
KDM3AQ9Y4C1 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC33.82■■■■□ 3
KDM3AQ9Y4C1 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC33.81■■■■□ 3
KDM3AQ9Y4C1 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC33.8■■■■□ 3
KDM3AQ9Y4C1 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC33.77■■■■□ 3
KDM3AQ9Y4C1 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC33.76■■■■□ 3
KDM3AQ9Y4C1 ZNRF2P1-201ENST00000441407 443 ntBASIC33.75■■■□□ 2.99
KDM3AQ9Y4C1 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC33.72■■■□□ 2.99
KDM3AQ9Y4C1 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
KDM3AQ9Y4C1 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC33.64■■■□□ 2.98
KDM3AQ9Y4C1 ILK-212ENST00000532063 1617 ntTSL 2 BASIC33.49■■■□□ 2.95
KDM3AQ9Y4C1 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC33.47■■■□□ 2.95
KDM3AQ9Y4C1 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC33.46■■■□□ 2.95
KDM3AQ9Y4C1 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
KDM3AQ9Y4C1 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
KDM3AQ9Y4C1 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
KDM3AQ9Y4C1 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC33.27■■■□□ 2.92
KDM3AQ9Y4C1 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC33.26■■■□□ 2.92
KDM3AQ9Y4C1 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
KDM3AQ9Y4C1 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC33.21■■■□□ 2.91
KDM3AQ9Y4C1 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
KDM3AQ9Y4C1 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC33.12■■■□□ 2.89
KDM3AQ9Y4C1 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC33.11■■■□□ 2.89
KDM3AQ9Y4C1 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC33.1■■■□□ 2.89
KDM3AQ9Y4C1 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
KDM3AQ9Y4C1 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC33.08■■■□□ 2.89
KDM3AQ9Y4C1 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.89
KDM3AQ9Y4C1 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
KDM3AQ9Y4C1 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
KDM3AQ9Y4C1 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC33.05■■■□□ 2.88
KDM3AQ9Y4C1 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC33.05■■■□□ 2.88
KDM3AQ9Y4C1 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
KDM3AQ9Y4C1 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC33■■■□□ 2.87
KDM3AQ9Y4C1 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
KDM3AQ9Y4C1 AP002365.1-201ENST00000603448 772 ntBASIC32.91■■■□□ 2.86
KDM3AQ9Y4C1 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC32.88■■■□□ 2.85
KDM3AQ9Y4C1 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
KDM3AQ9Y4C1 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
KDM3AQ9Y4C1 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
KDM3AQ9Y4C1 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
KDM3AQ9Y4C1 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
KDM3AQ9Y4C1 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC32.74■■■□□ 2.83
KDM3AQ9Y4C1 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC32.72■■■□□ 2.83
KDM3AQ9Y4C1 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC32.72■■■□□ 2.83
KDM3AQ9Y4C1 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC32.72■■■□□ 2.83
KDM3AQ9Y4C1 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
KDM3AQ9Y4C1 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
KDM3AQ9Y4C1 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms