Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 AC135731.1-201ENST00000569415 2548 ntBASIC15.28■□□□□ 0.04
CDC42SE1Q9NRR8 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDC42SE1Q9NRR8 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDC42SE1Q9NRR8 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDC42SE1Q9NRR8 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDC42SE1Q9NRR8 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDC42SE1Q9NRR8 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDC42SE1Q9NRR8 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
CDC42SE1Q9NRR8 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CDC42SE1Q9NRR8 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CDC42SE1Q9NRR8 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDC42SE1Q9NRR8 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDC42SE1Q9NRR8 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CDC42SE1Q9NRR8 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDC42SE1Q9NRR8 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDC42SE1Q9NRR8 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDC42SE1Q9NRR8 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CDC42SE1Q9NRR8 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDC42SE1Q9NRR8 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDC42SE1Q9NRR8 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDC42SE1Q9NRR8 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC15.1■□□□□ 0.01
CDC42SE1Q9NRR8 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDC42SE1Q9NRR8 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC15.09■□□□□ 0.01
CDC42SE1Q9NRR8 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
CDC42SE1Q9NRR8 HES6-203ENST00000409160 1600 ntTSL 2 BASIC15.06■□□□□ 0
CDC42SE1Q9NRR8 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CDC42SE1Q9NRR8 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CDC42SE1Q9NRR8 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC15.05■□□□□ -0
CDC42SE1Q9NRR8 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC15.05■□□□□ -0
CDC42SE1Q9NRR8 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
CDC42SE1Q9NRR8 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDC42SE1Q9NRR8 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC15.04■□□□□ -0
CDC42SE1Q9NRR8 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CDC42SE1Q9NRR8 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
CDC42SE1Q9NRR8 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDC42SE1Q9NRR8 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDC42SE1Q9NRR8 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CDC42SE1Q9NRR8 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDC42SE1Q9NRR8 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CDC42SE1Q9NRR8 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
CDC42SE1Q9NRR8 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDC42SE1Q9NRR8 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CDC42SE1Q9NRR8 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CDC42SE1Q9NRR8 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC14.98□□□□□ -0.01
CDC42SE1Q9NRR8 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CDC42SE1Q9NRR8 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDC42SE1Q9NRR8 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDC42SE1Q9NRR8 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
CDC42SE1Q9NRR8 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDC42SE1Q9NRR8 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDC42SE1Q9NRR8 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDC42SE1Q9NRR8 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
CDC42SE1Q9NRR8 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC14.91□□□□□ -0.02
CDC42SE1Q9NRR8 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDC42SE1Q9NRR8 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC14.91□□□□□ -0.02
CDC42SE1Q9NRR8 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDC42SE1Q9NRR8 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
CDC42SE1Q9NRR8 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDC42SE1Q9NRR8 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDC42SE1Q9NRR8 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CDC42SE1Q9NRR8 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC14.88□□□□□ -0.03
CDC42SE1Q9NRR8 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC14.87□□□□□ -0.03
CDC42SE1Q9NRR8 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC14.86□□□□□ -0.03
CDC42SE1Q9NRR8 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDC42SE1Q9NRR8 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDC42SE1Q9NRR8 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDC42SE1Q9NRR8 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDC42SE1Q9NRR8 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDC42SE1Q9NRR8 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDC42SE1Q9NRR8 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
CDC42SE1Q9NRR8 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDC42SE1Q9NRR8 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDC42SE1Q9NRR8 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CDC42SE1Q9NRR8 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDC42SE1Q9NRR8 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDC42SE1Q9NRR8 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDC42SE1Q9NRR8 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDC42SE1Q9NRR8 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CDC42SE1Q9NRR8 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
CDC42SE1Q9NRR8 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDC42SE1Q9NRR8 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC14.78□□□□□ -0.04
CDC42SE1Q9NRR8 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC14.78□□□□□ -0.04
CDC42SE1Q9NRR8 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CDC42SE1Q9NRR8 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDC42SE1Q9NRR8 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDC42SE1Q9NRR8 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
CDC42SE1Q9NRR8 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDC42SE1Q9NRR8 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CDC42SE1Q9NRR8 SHF-206ENST00000560471 2499 ntTSL 5 BASIC14.72□□□□□ -0.05
CDC42SE1Q9NRR8 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CDC42SE1Q9NRR8 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CDC42SE1Q9NRR8 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC14.71□□□□□ -0.06
CDC42SE1Q9NRR8 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CDC42SE1Q9NRR8 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDC42SE1Q9NRR8 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CDC42SE1Q9NRR8 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDC42SE1Q9NRR8 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDC42SE1Q9NRR8 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDC42SE1Q9NRR8 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDC42SE1Q9NRR8 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 309.4 ms