Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
KRT39Q6A163 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC31.16■■■□□ 2.58
KRT39Q6A163 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
KRT39Q6A163 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
KRT39Q6A163 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
KRT39Q6A163 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC31.06■■■□□ 2.56
KRT39Q6A163 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
KRT39Q6A163 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
KRT39Q6A163 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.01■■■□□ 2.55
KRT39Q6A163 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
KRT39Q6A163 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC30.99■■■□□ 2.55
KRT39Q6A163 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
KRT39Q6A163 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
KRT39Q6A163 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.95■■■□□ 2.54
KRT39Q6A163 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.93■■■□□ 2.54
KRT39Q6A163 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
KRT39Q6A163 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.92■■■□□ 2.54
KRT39Q6A163 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC30.92■■■□□ 2.54
KRT39Q6A163 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC30.92■■■□□ 2.54
KRT39Q6A163 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
KRT39Q6A163 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
KRT39Q6A163 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.86■■■□□ 2.53
KRT39Q6A163 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
KRT39Q6A163 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
KRT39Q6A163 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
KRT39Q6A163 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.83■■■□□ 2.53
KRT39Q6A163 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC30.83■■■□□ 2.53
KRT39Q6A163 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.82■■■□□ 2.52
KRT39Q6A163 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
KRT39Q6A163 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.79■■■□□ 2.52
KRT39Q6A163 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
KRT39Q6A163 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
KRT39Q6A163 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
KRT39Q6A163 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
KRT39Q6A163 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
KRT39Q6A163 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
KRT39Q6A163 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.73■■■□□ 2.51
KRT39Q6A163 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
KRT39Q6A163 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
KRT39Q6A163 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
KRT39Q6A163 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
KRT39Q6A163 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
KRT39Q6A163 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
KRT39Q6A163 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
KRT39Q6A163 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.66■■■□□ 2.5
KRT39Q6A163 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.64■■■□□ 2.5
KRT39Q6A163 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
KRT39Q6A163 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
KRT39Q6A163 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
KRT39Q6A163 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
KRT39Q6A163 DYNLL1-208ENST00000550178 581 ntBASIC30.63■■■□□ 2.49
KRT39Q6A163 AP002365.1-201ENST00000603448 772 ntBASIC30.62■■■□□ 2.49
KRT39Q6A163 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
KRT39Q6A163 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC30.6■■■□□ 2.49
KRT39Q6A163 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
KRT39Q6A163 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.55■■■□□ 2.48
KRT39Q6A163 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC30.54■■■□□ 2.48
KRT39Q6A163 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.54■■■□□ 2.48
KRT39Q6A163 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
KRT39Q6A163 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
KRT39Q6A163 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
KRT39Q6A163 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.5■■■□□ 2.47
KRT39Q6A163 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
KRT39Q6A163 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
KRT39Q6A163 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.46■■■□□ 2.47
KRT39Q6A163 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.46■■■□□ 2.47
KRT39Q6A163 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.46■■■□□ 2.47
KRT39Q6A163 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC30.46■■■□□ 2.47
KRT39Q6A163 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
KRT39Q6A163 AL031258.1-201ENST00000623562 325 ntBASIC30.43■■■□□ 2.46
KRT39Q6A163 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.42■■■□□ 2.46
KRT39Q6A163 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC30.42■■■□□ 2.46
KRT39Q6A163 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
KRT39Q6A163 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.39■■■□□ 2.46
KRT39Q6A163 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC30.39■■■□□ 2.46
KRT39Q6A163 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC30.35■■■□□ 2.45
KRT39Q6A163 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
KRT39Q6A163 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
KRT39Q6A163 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.31■■■□□ 2.44
KRT39Q6A163 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC30.3■■■□□ 2.44
KRT39Q6A163 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.3■■■□□ 2.44
KRT39Q6A163 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.29■■■□□ 2.44
KRT39Q6A163 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
KRT39Q6A163 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
KRT39Q6A163 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC30.27■■■□□ 2.44
KRT39Q6A163 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.26■■■□□ 2.43
KRT39Q6A163 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
KRT39Q6A163 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
KRT39Q6A163 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
KRT39Q6A163 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.24■■■□□ 2.43
KRT39Q6A163 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
KRT39Q6A163 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC30.23■■■□□ 2.43
KRT39Q6A163 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC30.22■■■□□ 2.43
KRT39Q6A163 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
KRT39Q6A163 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
KRT39Q6A163 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.19■■■□□ 2.42
KRT39Q6A163 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
KRT39Q6A163 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.18■■■□□ 2.42
KRT39Q6A163 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
KRT39Q6A163 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms