Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC28.08■■■□□ 2.09
PTCHD3Q3KNS1 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC28.05■■■□□ 2.08
PTCHD3Q3KNS1 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC28.04■■■□□ 2.08
PTCHD3Q3KNS1 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC28.04■■■□□ 2.08
PTCHD3Q3KNS1 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
PTCHD3Q3KNS1 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC28■■■□□ 2.07
PTCHD3Q3KNS1 AP002365.1-201ENST00000603448 772 ntBASIC28■■■□□ 2.07
PTCHD3Q3KNS1 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
PTCHD3Q3KNS1 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
PTCHD3Q3KNS1 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
PTCHD3Q3KNS1 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC27.91■■■□□ 2.06
PTCHD3Q3KNS1 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC27.91■■■□□ 2.06
PTCHD3Q3KNS1 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC27.89■■■□□ 2.06
PTCHD3Q3KNS1 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
PTCHD3Q3KNS1 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC27.88■■■□□ 2.05
PTCHD3Q3KNS1 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC27.86■■■□□ 2.05
PTCHD3Q3KNS1 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC27.85■■■□□ 2.05
PTCHD3Q3KNS1 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC27.84■■■□□ 2.05
PTCHD3Q3KNS1 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
PTCHD3Q3KNS1 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC27.83■■■□□ 2.05
PTCHD3Q3KNS1 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
PTCHD3Q3KNS1 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC27.82■■■□□ 2.04
PTCHD3Q3KNS1 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
PTCHD3Q3KNS1 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
PTCHD3Q3KNS1 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
PTCHD3Q3KNS1 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC27.8■■■□□ 2.04
PTCHD3Q3KNS1 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
PTCHD3Q3KNS1 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC27.78■■■□□ 2.04
PTCHD3Q3KNS1 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
PTCHD3Q3KNS1 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
PTCHD3Q3KNS1 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC27.76■■■□□ 2.03
PTCHD3Q3KNS1 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
PTCHD3Q3KNS1 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
PTCHD3Q3KNS1 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC27.74■■■□□ 2.03
PTCHD3Q3KNS1 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
PTCHD3Q3KNS1 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC27.73■■■□□ 2.03
PTCHD3Q3KNS1 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
PTCHD3Q3KNS1 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
PTCHD3Q3KNS1 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC27.72■■■□□ 2.03
PTCHD3Q3KNS1 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
PTCHD3Q3KNS1 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC27.68■■■□□ 2.02
PTCHD3Q3KNS1 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC27.68■■■□□ 2.02
PTCHD3Q3KNS1 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
PTCHD3Q3KNS1 DYNLL1-208ENST00000550178 581 ntBASIC27.67■■■□□ 2.02
PTCHD3Q3KNS1 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC27.67■■■□□ 2.02
PTCHD3Q3KNS1 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC27.67■■■□□ 2.02
PTCHD3Q3KNS1 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC27.66■■■□□ 2.02
PTCHD3Q3KNS1 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC27.65■■■□□ 2.02
PTCHD3Q3KNS1 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC27.65■■■□□ 2.02
PTCHD3Q3KNS1 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
PTCHD3Q3KNS1 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
PTCHD3Q3KNS1 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
PTCHD3Q3KNS1 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC27.6■■■□□ 2.01
PTCHD3Q3KNS1 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC27.58■■■□□ 2.01
PTCHD3Q3KNS1 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC27.57■■■□□ 2
PTCHD3Q3KNS1 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC27.57■■■□□ 2
PTCHD3Q3KNS1 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
PTCHD3Q3KNS1 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
PTCHD3Q3KNS1 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
PTCHD3Q3KNS1 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
PTCHD3Q3KNS1 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
PTCHD3Q3KNS1 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
PTCHD3Q3KNS1 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
PTCHD3Q3KNS1 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
PTCHD3Q3KNS1 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
PTCHD3Q3KNS1 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC27.49■■□□□ 1.99
PTCHD3Q3KNS1 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC27.49■■□□□ 1.99
PTCHD3Q3KNS1 AL031258.1-201ENST00000623562 325 ntBASIC27.44■■□□□ 1.98
PTCHD3Q3KNS1 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
PTCHD3Q3KNS1 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC27.42■■□□□ 1.98
PTCHD3Q3KNS1 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC27.42■■□□□ 1.98
PTCHD3Q3KNS1 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
PTCHD3Q3KNS1 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
PTCHD3Q3KNS1 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC27.41■■□□□ 1.98
PTCHD3Q3KNS1 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC27.38■■□□□ 1.97
PTCHD3Q3KNS1 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
PTCHD3Q3KNS1 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC27.34■■□□□ 1.97
PTCHD3Q3KNS1 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC27.34■■□□□ 1.97
PTCHD3Q3KNS1 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
PTCHD3Q3KNS1 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
PTCHD3Q3KNS1 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC27.3■■□□□ 1.96
PTCHD3Q3KNS1 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
PTCHD3Q3KNS1 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC27.29■■□□□ 1.96
PTCHD3Q3KNS1 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
PTCHD3Q3KNS1 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
PTCHD3Q3KNS1 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
PTCHD3Q3KNS1 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC27.25■■□□□ 1.95
PTCHD3Q3KNS1 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC27.25■■□□□ 1.95
PTCHD3Q3KNS1 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC27.24■■□□□ 1.95
PTCHD3Q3KNS1 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC27.24■■□□□ 1.95
PTCHD3Q3KNS1 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC27.24■■□□□ 1.95
PTCHD3Q3KNS1 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC27.23■■□□□ 1.95
PTCHD3Q3KNS1 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
PTCHD3Q3KNS1 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC27.21■■□□□ 1.95
PTCHD3Q3KNS1 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PTCHD3Q3KNS1 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC27.21■■□□□ 1.95
PTCHD3Q3KNS1 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PTCHD3Q3KNS1 MVK-208ENST00000539696 608 ntTSL 5 BASIC27.2■■□□□ 1.94
PTCHD3Q3KNS1 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
PTCHD3Q3KNS1 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC27.19■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms