Protein–RNA interactions for Protein: P19438

TNFRSF1A, Tumor necrosis factor receptor superfamily member 1A, humanhuman

Predictions only

Length 455 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1AP19438 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC24.47■■□□□ 1.51
TNFRSF1AP19438 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC24.47■■□□□ 1.51
TNFRSF1AP19438 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
TNFRSF1AP19438 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
TNFRSF1AP19438 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
TNFRSF1AP19438 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
TNFRSF1AP19438 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
TNFRSF1AP19438 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
TNFRSF1AP19438 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC24.39■■□□□ 1.49
TNFRSF1AP19438 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
TNFRSF1AP19438 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
TNFRSF1AP19438 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
TNFRSF1AP19438 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
TNFRSF1AP19438 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
TNFRSF1AP19438 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC24.34■■□□□ 1.49
TNFRSF1AP19438 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC24.33■■□□□ 1.49
TNFRSF1AP19438 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC24.33■■□□□ 1.49
TNFRSF1AP19438 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
TNFRSF1AP19438 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TNFRSF1AP19438 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
TNFRSF1AP19438 DYNLL1-208ENST00000550178 581 ntBASIC24.29■■□□□ 1.48
TNFRSF1AP19438 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC24.28■■□□□ 1.48
TNFRSF1AP19438 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC24.27■■□□□ 1.48
TNFRSF1AP19438 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
TNFRSF1AP19438 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC24.25■■□□□ 1.47
TNFRSF1AP19438 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
TNFRSF1AP19438 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC24.24■■□□□ 1.47
TNFRSF1AP19438 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
TNFRSF1AP19438 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC24.24■■□□□ 1.47
TNFRSF1AP19438 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
TNFRSF1AP19438 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
TNFRSF1AP19438 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC24.2■■□□□ 1.46
TNFRSF1AP19438 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
TNFRSF1AP19438 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC24.19■■□□□ 1.46
TNFRSF1AP19438 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC24.18■■□□□ 1.46
TNFRSF1AP19438 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
TNFRSF1AP19438 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC24.12■■□□□ 1.45
TNFRSF1AP19438 AL031258.1-201ENST00000623562 325 ntBASIC24.11■■□□□ 1.45
TNFRSF1AP19438 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
TNFRSF1AP19438 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC24.09■■□□□ 1.45
TNFRSF1AP19438 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
TNFRSF1AP19438 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
TNFRSF1AP19438 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
TNFRSF1AP19438 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
TNFRSF1AP19438 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
TNFRSF1AP19438 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC24.04■■□□□ 1.44
TNFRSF1AP19438 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TNFRSF1AP19438 EBPL-203ENST00000378270 579 ntTSL 2 BASIC24.02■■□□□ 1.44
TNFRSF1AP19438 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC24.02■■□□□ 1.44
TNFRSF1AP19438 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
TNFRSF1AP19438 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
TNFRSF1AP19438 MVK-208ENST00000539696 608 ntTSL 5 BASIC23.99■■□□□ 1.43
TNFRSF1AP19438 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC23.96■■□□□ 1.43
TNFRSF1AP19438 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
TNFRSF1AP19438 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
TNFRSF1AP19438 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
TNFRSF1AP19438 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
TNFRSF1AP19438 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC23.9■■□□□ 1.42
TNFRSF1AP19438 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
TNFRSF1AP19438 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC23.89■■□□□ 1.41
TNFRSF1AP19438 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC23.89■■□□□ 1.41
TNFRSF1AP19438 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.41
TNFRSF1AP19438 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TNFRSF1AP19438 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
TNFRSF1AP19438 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC23.83■■□□□ 1.41
TNFRSF1AP19438 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
TNFRSF1AP19438 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC23.82■■□□□ 1.4
TNFRSF1AP19438 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC23.82■■□□□ 1.4
TNFRSF1AP19438 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TNFRSF1AP19438 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
TNFRSF1AP19438 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
TNFRSF1AP19438 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TNFRSF1AP19438 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TNFRSF1AP19438 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC23.75■■□□□ 1.39
TNFRSF1AP19438 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC23.75■■□□□ 1.39
TNFRSF1AP19438 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
TNFRSF1AP19438 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC23.72■■□□□ 1.39
TNFRSF1AP19438 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
TNFRSF1AP19438 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC23.69■■□□□ 1.38
TNFRSF1AP19438 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TNFRSF1AP19438 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC23.68■■□□□ 1.38
TNFRSF1AP19438 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
TNFRSF1AP19438 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
TNFRSF1AP19438 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC23.65■■□□□ 1.38
TNFRSF1AP19438 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
TNFRSF1AP19438 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
TNFRSF1AP19438 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC23.64■■□□□ 1.37
TNFRSF1AP19438 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC23.64■■□□□ 1.37
TNFRSF1AP19438 KLF16-203ENST00000592313 508 ntTSL 3 BASIC23.63■■□□□ 1.37
TNFRSF1AP19438 RARRES2P7-201ENST00000567349 469 ntBASIC23.61■■□□□ 1.37
TNFRSF1AP19438 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC23.61■■□□□ 1.37
TNFRSF1AP19438 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC23.6■■□□□ 1.37
TNFRSF1AP19438 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TNFRSF1AP19438 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
TNFRSF1AP19438 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TNFRSF1AP19438 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
TNFRSF1AP19438 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
TNFRSF1AP19438 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC23.54■■□□□ 1.36
TNFRSF1AP19438 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC23.54■■□□□ 1.36
TNFRSF1AP19438 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms