Protein–RNA interactions for Protein: O15353

FOXN1, Forkhead box protein N1, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN1O15353 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC35.27■■■■□ 3.24
FOXN1O15353 RARRES2P7-201ENST00000567349 469 ntBASIC35.26■■■■□ 3.24
FOXN1O15353 AL031258.1-201ENST00000623562 325 ntBASIC35.26■■■■□ 3.24
FOXN1O15353 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
FOXN1O15353 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
FOXN1O15353 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC35.19■■■■□ 3.22
FOXN1O15353 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
FOXN1O15353 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
FOXN1O15353 AC097358.2-201ENST00000607541 1159 ntBASIC35.14■■■■□ 3.22
FOXN1O15353 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
FOXN1O15353 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC35.08■■■■□ 3.21
FOXN1O15353 SUZ12P1-203ENST00000578195 985 ntBASIC35.05■■■■□ 3.2
FOXN1O15353 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC35.02■■■■□ 3.2
FOXN1O15353 AC136428.2-201ENST00000563187 214 ntBASIC34.97■■■■□ 3.19
FOXN1O15353 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC34.92■■■■□ 3.18
FOXN1O15353 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
FOXN1O15353 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
FOXN1O15353 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC34.86■■■■□ 3.17
FOXN1O15353 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
FOXN1O15353 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
FOXN1O15353 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
FOXN1O15353 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC34.82■■■■□ 3.16
FOXN1O15353 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC34.8■■■■□ 3.16
FOXN1O15353 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
FOXN1O15353 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC34.77■■■■□ 3.16
FOXN1O15353 SETD8P1-201ENST00000623146 1180 ntBASIC34.75■■■■□ 3.15
FOXN1O15353 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC34.73■■■■□ 3.15
FOXN1O15353 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
FOXN1O15353 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
FOXN1O15353 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC34.71■■■■□ 3.15
FOXN1O15353 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC34.68■■■■□ 3.14
FOXN1O15353 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC34.67■■■■□ 3.14
FOXN1O15353 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
FOXN1O15353 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC34.65■■■■□ 3.14
FOXN1O15353 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
FOXN1O15353 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC34.61■■■■□ 3.13
FOXN1O15353 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC34.61■■■■□ 3.13
FOXN1O15353 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC34.61■■■■□ 3.13
FOXN1O15353 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC34.59■■■■□ 3.13
FOXN1O15353 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
FOXN1O15353 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
FOXN1O15353 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC34.54■■■■□ 3.12
FOXN1O15353 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC34.54■■■■□ 3.12
FOXN1O15353 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC34.53■■■■□ 3.12
FOXN1O15353 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC34.53■■■■□ 3.12
FOXN1O15353 MIR7108-201ENST00000614319 87 ntBASIC34.53■■■■□ 3.12
FOXN1O15353 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
FOXN1O15353 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
FOXN1O15353 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC34.49■■■■□ 3.11
FOXN1O15353 AL162393.1-201ENST00000437852 946 ntBASIC34.49■■■■□ 3.11
FOXN1O15353 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC34.47■■■■□ 3.11
FOXN1O15353 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC34.44■■■■□ 3.1
FOXN1O15353 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC34.39■■■■□ 3.1
FOXN1O15353 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
FOXN1O15353 PVT1-219ENST00000523427 938 ntTSL 3 BASIC34.38■■■■□ 3.09
FOXN1O15353 NRG1-221ENST00000614767 762 ntTSL 5 BASIC34.37■■■■□ 3.09
FOXN1O15353 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
FOXN1O15353 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC34.34■■■■□ 3.09
FOXN1O15353 ABHD17AP4-201ENST00000411545 909 ntBASIC34.33■■■■□ 3.09
FOXN1O15353 KLF16-203ENST00000592313 508 ntTSL 3 BASIC34.33■■■■□ 3.09
FOXN1O15353 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
FOXN1O15353 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC34.32■■■■□ 3.08
FOXN1O15353 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC34.31■■■■□ 3.08
FOXN1O15353 MBP-237ENST00000579129 1052 ntTSL 5 BASIC34.31■■■■□ 3.08
FOXN1O15353 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC34.29■■■■□ 3.08
FOXN1O15353 HLA-V-202ENST00000446817 847 ntBASIC34.28■■■■□ 3.08
FOXN1O15353 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC34.28■■■■□ 3.08
FOXN1O15353 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC34.26■■■■□ 3.07
FOXN1O15353 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC34.24■■■■□ 3.07
FOXN1O15353 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
FOXN1O15353 AP006261.1-201ENST00000584783 668 ntBASIC34.2■■■■□ 3.07
FOXN1O15353 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC34.19■■■■□ 3.06
FOXN1O15353 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC34.19■■■■□ 3.06
FOXN1O15353 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC34.16■■■■□ 3.06
FOXN1O15353 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC34.12■■■■□ 3.05
FOXN1O15353 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC34.11■■■■□ 3.05
FOXN1O15353 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
FOXN1O15353 EBPL-203ENST00000378270 579 ntTSL 2 BASIC34.09■■■■□ 3.05
FOXN1O15353 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
FOXN1O15353 CAHM-201ENST00000604200 896 ntBASIC34.05■■■■□ 3.04
FOXN1O15353 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC34.04■■■■□ 3.04
FOXN1O15353 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC34.04■■■■□ 3.04
FOXN1O15353 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC34.03■■■■□ 3.04
FOXN1O15353 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC34.02■■■■□ 3.04
FOXN1O15353 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC33.99■■■■□ 3.03
FOXN1O15353 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC33.98■■■■□ 3.03
FOXN1O15353 MLEC-202ENST00000412616 841 ntTSL 3 BASIC33.96■■■■□ 3.03
FOXN1O15353 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC33.92■■■■□ 3.02
FOXN1O15353 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC33.91■■■■□ 3.02
FOXN1O15353 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC33.9■■■■□ 3.02
FOXN1O15353 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC33.87■■■■□ 3.01
FOXN1O15353 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC33.86■■■■□ 3.01
FOXN1O15353 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC33.85■■■■□ 3.01
FOXN1O15353 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC33.84■■■■□ 3.01
FOXN1O15353 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC33.82■■■■□ 3
FOXN1O15353 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
FOXN1O15353 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
FOXN1O15353 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC33.79■■■■□ 3
FOXN1O15353 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC33.79■■■■□ 3
FOXN1O15353 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms