Protein–RNA interactions for Protein: A0A0B4J276

TRAV25, T-cell receptor alpha variable 25 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV25A0A0B4J276 AP002365.1-201ENST00000603448 772 ntBASIC21.71■■□□□ 1.07
TRAV25A0A0B4J276 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV25A0A0B4J276 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
TRAV25A0A0B4J276 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV25A0A0B4J276 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
TRAV25A0A0B4J276 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV25A0A0B4J276 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV25A0A0B4J276 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV25A0A0B4J276 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV25A0A0B4J276 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
TRAV25A0A0B4J276 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
TRAV25A0A0B4J276 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
TRAV25A0A0B4J276 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
TRAV25A0A0B4J276 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV25A0A0B4J276 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV25A0A0B4J276 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC21.58■■□□□ 1.05
TRAV25A0A0B4J276 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC21.57■■□□□ 1.04
TRAV25A0A0B4J276 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC21.57■■□□□ 1.04
TRAV25A0A0B4J276 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRAV25A0A0B4J276 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC21.56■■□□□ 1.04
TRAV25A0A0B4J276 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
TRAV25A0A0B4J276 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRAV25A0A0B4J276 DYNLL1-208ENST00000550178 581 ntBASIC21.54■■□□□ 1.04
TRAV25A0A0B4J276 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC21.53■■□□□ 1.04
TRAV25A0A0B4J276 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV25A0A0B4J276 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV25A0A0B4J276 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRAV25A0A0B4J276 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC21.5■■□□□ 1.03
TRAV25A0A0B4J276 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV25A0A0B4J276 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRAV25A0A0B4J276 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC21.47■■□□□ 1.03
TRAV25A0A0B4J276 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRAV25A0A0B4J276 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC21.46■■□□□ 1.03
TRAV25A0A0B4J276 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
TRAV25A0A0B4J276 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV25A0A0B4J276 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC21.44■■□□□ 1.02
TRAV25A0A0B4J276 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC21.43■■□□□ 1.02
TRAV25A0A0B4J276 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRAV25A0A0B4J276 AL031258.1-201ENST00000623562 325 ntBASIC21.4■■□□□ 1.02
TRAV25A0A0B4J276 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV25A0A0B4J276 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRAV25A0A0B4J276 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
TRAV25A0A0B4J276 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
TRAV25A0A0B4J276 EBPL-203ENST00000378270 579 ntTSL 2 BASIC21.37■■□□□ 1.01
TRAV25A0A0B4J276 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV25A0A0B4J276 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRAV25A0A0B4J276 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRAV25A0A0B4J276 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRAV25A0A0B4J276 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC21.33■■□□□ 1.01
TRAV25A0A0B4J276 MVK-208ENST00000539696 608 ntTSL 5 BASIC21.33■■□□□ 1.01
TRAV25A0A0B4J276 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAV25A0A0B4J276 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAV25A0A0B4J276 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC21.26■□□□□ 0.99
TRAV25A0A0B4J276 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC21.26■□□□□ 0.99
TRAV25A0A0B4J276 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
TRAV25A0A0B4J276 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV25A0A0B4J276 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV25A0A0B4J276 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV25A0A0B4J276 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC21.2■□□□□ 0.98
TRAV25A0A0B4J276 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
TRAV25A0A0B4J276 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC21.19■□□□□ 0.98
TRAV25A0A0B4J276 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC21.19■□□□□ 0.98
TRAV25A0A0B4J276 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV25A0A0B4J276 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC21.17■□□□□ 0.98
TRAV25A0A0B4J276 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
TRAV25A0A0B4J276 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV25A0A0B4J276 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TRAV25A0A0B4J276 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV25A0A0B4J276 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV25A0A0B4J276 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC21.13■□□□□ 0.97
TRAV25A0A0B4J276 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV25A0A0B4J276 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV25A0A0B4J276 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV25A0A0B4J276 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC21.09■□□□□ 0.97
TRAV25A0A0B4J276 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
TRAV25A0A0B4J276 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV25A0A0B4J276 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC21.07■□□□□ 0.96
TRAV25A0A0B4J276 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
TRAV25A0A0B4J276 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV25A0A0B4J276 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
TRAV25A0A0B4J276 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC21.03■□□□□ 0.96
TRAV25A0A0B4J276 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC21.03■□□□□ 0.96
TRAV25A0A0B4J276 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV25A0A0B4J276 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC21.02■□□□□ 0.96
TRAV25A0A0B4J276 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC21.01■□□□□ 0.95
TRAV25A0A0B4J276 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV25A0A0B4J276 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.99■□□□□ 0.95
TRAV25A0A0B4J276 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV25A0A0B4J276 KLF16-203ENST00000592313 508 ntTSL 3 BASIC20.97■□□□□ 0.95
TRAV25A0A0B4J276 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV25A0A0B4J276 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
TRAV25A0A0B4J276 RARRES2P7-201ENST00000567349 469 ntBASIC20.93■□□□□ 0.94
TRAV25A0A0B4J276 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV25A0A0B4J276 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV25A0A0B4J276 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV25A0A0B4J276 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC20.91■□□□□ 0.94
TRAV25A0A0B4J276 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRAV25A0A0B4J276 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC20.89■□□□□ 0.93
TRAV25A0A0B4J276 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC20.89■□□□□ 0.93
TRAV25A0A0B4J276 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms