Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC15.22■□□□□ 0.03
HSPG2P98160 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HSPG2P98160 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
HSPG2P98160 AP001330.3-201ENST00000520123 633 ntBASIC15.22■□□□□ 0.03
HSPG2P98160 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HSPG2P98160 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HSPG2P98160 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC15.21■□□□□ 0.03
HSPG2P98160 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HSPG2P98160 AL136967.2-201ENST00000623968 743 ntBASIC15.21■□□□□ 0.03
HSPG2P98160 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HSPG2P98160 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HSPG2P98160 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HSPG2P98160 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HSPG2P98160 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HSPG2P98160 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HSPG2P98160 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HSPG2P98160 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
HSPG2P98160 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC15.2■□□□□ 0.02
HSPG2P98160 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
HSPG2P98160 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HSPG2P98160 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
HSPG2P98160 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HSPG2P98160 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HSPG2P98160 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HSPG2P98160 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HSPG2P98160 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HSPG2P98160 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HSPG2P98160 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC15.19■□□□□ 0.02
HSPG2P98160 AL356740.2-201ENST00000601559 647 ntBASIC15.19■□□□□ 0.02
HSPG2P98160 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HSPG2P98160 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC15.18■□□□□ 0.02
HSPG2P98160 AP004833.2-201ENST00000532228 1454 ntBASIC15.18■□□□□ 0.02
HSPG2P98160 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HSPG2P98160 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
HSPG2P98160 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
HSPG2P98160 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HSPG2P98160 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
HSPG2P98160 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HSPG2P98160 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HSPG2P98160 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HSPG2P98160 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HSPG2P98160 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC15.17■□□□□ 0.02
HSPG2P98160 RARRES2P11-201ENST00000635158 484 ntBASIC15.17■□□□□ 0.02
HSPG2P98160 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HSPG2P98160 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HSPG2P98160 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HSPG2P98160 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC15.16■□□□□ 0.02
HSPG2P98160 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HSPG2P98160 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC15.16■□□□□ 0.02
HSPG2P98160 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC15.16■□□□□ 0.02
HSPG2P98160 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HSPG2P98160 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HSPG2P98160 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HSPG2P98160 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC15.16■□□□□ 0.02
HSPG2P98160 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC15.15■□□□□ 0.02
HSPG2P98160 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
HSPG2P98160 ABCB10P3-201ENST00000561950 2166 ntBASIC15.15■□□□□ 0.02
HSPG2P98160 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HSPG2P98160 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HSPG2P98160 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HSPG2P98160 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HSPG2P98160 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC15.15■□□□□ 0.02
HSPG2P98160 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HSPG2P98160 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC15.15■□□□□ 0.02
HSPG2P98160 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC15.15■□□□□ 0.02
HSPG2P98160 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC15.14■□□□□ 0.01
HSPG2P98160 AF131216.4-201ENST00000638924 1588 ntBASIC15.14■□□□□ 0.01
HSPG2P98160 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC15.14■□□□□ 0.01
HSPG2P98160 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HSPG2P98160 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HSPG2P98160 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC15.14■□□□□ 0.01
HSPG2P98160 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
HSPG2P98160 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HSPG2P98160 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC15.14■□□□□ 0.01
HSPG2P98160 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HSPG2P98160 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
HSPG2P98160 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HSPG2P98160 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HSPG2P98160 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC15.13■□□□□ 0.01
HSPG2P98160 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HSPG2P98160 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC15.13■□□□□ 0.01
HSPG2P98160 AF213884.3-201ENST00000563833 479 ntBASIC15.13■□□□□ 0.01
HSPG2P98160 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
HSPG2P98160 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
HSPG2P98160 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
HSPG2P98160 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HSPG2P98160 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HSPG2P98160 ESRRAP2-201ENST00000418437 1549 ntBASIC15.12■□□□□ 0.01
HSPG2P98160 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HSPG2P98160 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HSPG2P98160 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HSPG2P98160 AP002414.2-202ENST00000590929 1450 ntBASIC15.11■□□□□ 0.01
HSPG2P98160 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC15.11■□□□□ 0.01
HSPG2P98160 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HSPG2P98160 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HSPG2P98160 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HSPG2P98160 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HSPG2P98160 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC15.11■□□□□ 0.01
HSPG2P98160 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC15.11■□□□□ 0.01
HSPG2P98160 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms