RNA–Protein interactions for RNA: ENST00000378197.4

RPP38-201, Transcript of ribonuclease P/MRP subunit p38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPP38, Length 1,457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPP38-201ENST00000378197 NISCHQ9Y2I1 1504 aa56.06■■■■■ 6.56
RPP38-201ENST00000378197 CCDC180Q9P1Z9 1646 aa49.84■■■■■ 5.57
RPP38-201ENST00000378197 ABCC9O60706 1549 aa48.81■■■■■ 5.4
RPP38-201ENST00000378197 RB1CC1Q8TDY2 1594 aa46.92■■■■■ 5.1
RPP38-201ENST00000378197 DCAF8L2P0C7V8 631 aa46.86■■■■■ 5.09
RPP38-201ENST00000378197 NACADO15069 1562 aa46.86■■■■■ 5.09
RPP38-201ENST00000378197 ZCCHC6Q5VYS8 1495 aaKnown RBP46.71■■■■■ 5.07
RPP38-201ENST00000378197 MYO15BQ96JP2 1530 aa46.56■■■■■ 5.04
RPP38-201ENST00000378197 DCAF1Q9Y4B6 1507 aa46.37■■■■■ 5.01
RPP38-201ENST00000378197 UNC13AQ9UPW8 1703 aa45.87■■■■■ 4.93
RPP38-201ENST00000378197 PABPN1Q86U42 306 aaKnown RBP eCLIP45.61■■■■■ 4.89
RPP38-201ENST00000378197 BICRAQ9NZM4 1560 aa45.51■■■■■ 4.88
RPP38-201ENST00000378197 SCRIBQ14160 1630 aa45.51■■■■■ 4.88
RPP38-201ENST00000378197 SHROOM4Q9ULL8 1493 aa45■■■■■ 4.79
RPP38-201ENST00000378197 DNAJC5BQ9UF47 199 aa44.8■■■■■ 4.76
RPP38-201ENST00000378197 EIF4G1Q04637 1599 aaKnown RBP44.32■■■■■ 4.68
RPP38-201ENST00000378197 CC2D2AQ9P2K1 1620 aa44.14■■■■■ 4.66
RPP38-201ENST00000378197 CECR2Q9BXF3 1484 aa43.85■■■■■ 4.61
RPP38-201ENST00000378197 SMARCA4P51532 1647 aa43.51■■■■■ 4.56
RPP38-201ENST00000378197 BAZ1AQ9NRL2 1556 aaPredicted RBP43.46■■■■■ 4.55
RPP38-201ENST00000378197 ATAD2BQ9ULI0 1458 aa43.28■■■■■ 4.52
RPP38-201ENST00000378197 NCAPD3P42695 1498 aa43.23■■■■■ 4.51
RPP38-201ENST00000378197 MROH2BQ7Z745 1585 aa43.22■■■■■ 4.51
RPP38-201ENST00000378197 SMARCA2P51531 1590 aa43.21■■■■■ 4.51
RPP38-201ENST00000378197 PEG3Q9GZU2 1588 aa43.07■■■■■ 4.49
RPP38-201ENST00000378197 HMGXB3Q12766 1538 aa43.03■■■■■ 4.48
RPP38-201ENST00000378197 BAZ1BQ9UIG0 1483 aaKnown RBP42.92■■■■■ 4.46
RPP38-201ENST00000378197 WIZO95785 1651 aa42.76■■■■■ 4.44
RPP38-201ENST00000378197 RSF1Q96T23 1441 aaPredicted RBP42.71■■■■■ 4.43
RPP38-201ENST00000378197 TOP2AP11388 1531 aaKnown RBP42.29■■■■■ 4.36
RPP38-201ENST00000378197 NESP48681 1621 aa42.23■■■■■ 4.35
RPP38-201ENST00000378197 LAMC3Q9Y6N6 1575 aa42.1■■■■■ 4.33
RPP38-201ENST00000378197 ERCC6Q03468 1493 aa42.06■■■■■ 4.32
RPP38-201ENST00000378197 CADPSQ9ULU8 1353 aa41.98■■■■■ 4.31
RPP38-201ENST00000378197 PDS5BQ9NTI5 1447 aa41.82■■■■■ 4.29
RPP38-201ENST00000378197 CCDC88BA6NC98 1476 aa41.8■■■■■ 4.28
RPP38-201ENST00000378197 KIF21AQ7Z4S6 1674 aa41.74■■■■■ 4.27
RPP38-201ENST00000378197 CFTRP13569 1480 aa41.73■■■■■ 4.27
RPP38-201ENST00000378197 SUPT5HO00267 1087 aaKnown RBP41.64■■■■■ 4.26
RPP38-201ENST00000378197 CUX2O14529 1486 aa41.6■■■■■ 4.25
RPP38-201ENST00000378197 THOC2Q8NI27 1593 aaKnown RBP41.59■■■■■ 4.25
RPP38-201ENST00000378197 FANCD2Q9BXW9 1451 aa41.51■■■■■ 4.24
RPP38-201ENST00000378197 CEP164Q9UPV0 1460 aa41.46■■■■■ 4.23
RPP38-201ENST00000378197 PRDM2Q13029 1718 aa41.42■■■■■ 4.22
RPP38-201ENST00000378197 MRC2Q9UBG0 1479 aa41.4■■■■■ 4.22
RPP38-201ENST00000378197 WDR62O43379 1518 aa41.26■■■■■ 4.2
RPP38-201ENST00000378197 URB2Q14146 1524 aaKnown RBP41.11■■■■■ 4.17
RPP38-201ENST00000378197 TOPBP1Q92547 1522 aa40.85■■■■■ 4.13
RPP38-201ENST00000378197 ABCC8Q09428 1581 aa40.82■■■■■ 4.12
RPP38-201ENST00000378197 DNMBPQ6XZF7 1577 aa40.8■■■■■ 4.12
RPP38-201ENST00000378197 IFT140Q96RY7 1462 aa40.58■■■■■ 4.09
RPP38-201ENST00000378197 CUX1P39880 1505 aa40.54■■■■■ 4.08
RPP38-201ENST00000378197 POLA1P09884 1462 aaPredicted RBP40.51■■■■■ 4.07
RPP38-201ENST00000378197 ZNF608Q9ULD9 1512 aaPredicted RBP40.43■■■■■ 4.06
RPP38-201ENST00000378197 FGD5Q6ZNL6 1462 aa40.42■■■■■ 4.06
RPP38-201ENST00000378197 TARBP1Q13395 1621 aaKnown RBP40.4■■■■■ 4.06
RPP38-201ENST00000378197 DNAJC5Q9H3Z4 198 aa40.34■■■■■ 4.05
RPP38-201ENST00000378197 RAD54L2Q9Y4B4 1467 aa40.34■■■■■ 4.05
RPP38-201ENST00000378197 SOGA1O94964 1423 aa40.33■■■■■ 4.05
RPP38-201ENST00000378197 WRNQ14191 1432 aaPredicted RBP eCLIP40.27■■■■■ 4.04
RPP38-201ENST00000378197 EIF4G3O43432 1585 aaKnown RBP40.27■■■■■ 4.04
RPP38-201ENST00000378197 SYNJ1O43426 1573 aa40.19■■■■■ 4.02
RPP38-201ENST00000378197 AQRO60306 1485 aaKnown RBP eCLIP40.19■■■■■ 4.02
RPP38-201ENST00000378197 TOP2BQ02880 1626 aa40.18■■■■■ 4.02
RPP38-201ENST00000378197 BIVM-ERCC5R4GMW8 1640 aa40.18■■■■■ 4.02
RPP38-201ENST00000378197 TDRD9Q8NDG6 1382 aaKnown RBP40.12■■■■■ 4.01
RPP38-201ENST00000378197 WDR97A6NE52 1622 aa40.08■■■■■ 4.01
RPP38-201ENST00000378197 ABCA10Q8WWZ4 1543 aa40.01■■■■■ 4
RPP38-201ENST00000378197 OSCARQ8IYS5 282 aa39.88■■■■□ 3.97
RPP38-201ENST00000378197 GAPVD1Q14C86 1478 aa39.86■■■■□ 3.97
RPP38-201ENST00000378197 ABCA5Q8WWZ7 1642 aa39.86■■■■□ 3.97
RPP38-201ENST00000378197 GRIN2BQ13224 1484 aa39.86■■■■□ 3.97
RPP38-201ENST00000378197 SNAPC4Q5SXM2 1469 aa39.83■■■■□ 3.97
RPP38-201ENST00000378197 PBRM1Q86U86 1689 aa39.79■■■■□ 3.96
RPP38-201ENST00000378197 CHD1O14646 1710 aa39.76■■■■□ 3.96
RPP38-201ENST00000378197 MAGI1Q96QZ7 1491 aaPredicted RBP39.75■■■■□ 3.95
RPP38-201ENST00000378197 FBLN2P98095 1184 aa39.71■■■■□ 3.95
RPP38-201ENST00000378197 SYNJ2O15056 1496 aa39.6■■■■□ 3.93
RPP38-201ENST00000378197 CHMP7Q8WUX9 453 aaPredicted RBP39.58■■■■□ 3.93
RPP38-201ENST00000378197 ERICH3Q5RHP9 1530 aa39.52■■■■□ 3.92
RPP38-201ENST00000378197 ADAMTS12P58397 1594 aa39.48■■■■□ 3.91
RPP38-201ENST00000378197 KIF27Q86VH2 1401 aa39.43■■■■□ 3.9
RPP38-201ENST00000378197 FHAD1B1AJZ9 1412 aa39.4■■■■□ 3.9
RPP38-201ENST00000378197 GRIN2AQ12879 1464 aa39.36■■■■□ 3.89
RPP38-201ENST00000378197 CLASP1Q7Z460 1538 aa39.32■■■■□ 3.89
RPP38-201ENST00000378197 TRIM41Q8WV44 630 aa39.31■■■■□ 3.88
RPP38-201ENST00000378197 IGF1RP08069 1367 aa39.27■■■■□ 3.88
RPP38-201ENST00000378197 RIMBP3CA6NJZ7 1639 aa39.26■■■■□ 3.88
RPP38-201ENST00000378197 RIMBP3BA6NNM3 1639 aa39.26■■■■□ 3.88
RPP38-201ENST00000378197 RIMBP3Q9UFD9 1639 aa39.26■■■■□ 3.88
RPP38-201ENST00000378197 ARHGEF11O15085 1522 aa39.25■■■■□ 3.87
RPP38-201ENST00000378197 NUP160Q12769 1436 aa39.17■■■■□ 3.86
RPP38-201ENST00000378197 CUL7Q14999 1698 aa39.17■■■■□ 3.86
RPP38-201ENST00000378197 CEP170Q5SW79 1584 aa39.17■■■■□ 3.86
RPP38-201ENST00000378197 RUSC2Q8N2Y8 1516 aa39.1■■■■□ 3.85
RPP38-201ENST00000378197 CARMIL1Q5VZK9 1371 aa39.04■■■■□ 3.84
RPP38-201ENST00000378197 ARAP1Q96P48 1450 aa38.94■■■■□ 3.82
RPP38-201ENST00000378197 CYB5RLQ6IPT4 315 aa38.89■■■■□ 3.82
RPP38-201ENST00000378197 SHROOM2Q13796 1616 aa38.88■■■■□ 3.82
RPP38-201ENST00000378197 CHIC1Q5VXU3 224 aa38.84■■■■□ 3.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms