Protein–RNA interactions for Protein: Q96HC4

PDLIM5, PDZ and LIM domain protein 5, humanhuman

Known RBP Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5Q96HC4 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PDLIM5Q96HC4 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.75■■□□□ 1.39
PDLIM5Q96HC4 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.74■■□□□ 1.39
PDLIM5Q96HC4 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PDLIM5Q96HC4 AC020928.2-201ENST00000588717 2197 ntBASIC23.74■■□□□ 1.39
PDLIM5Q96HC4 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PDLIM5Q96HC4 ECEL1P2-201ENST00000461596 1295 ntBASIC23.74■■□□□ 1.39
PDLIM5Q96HC4 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.74■■□□□ 1.39
PDLIM5Q96HC4 AC022413.1-201ENST00000624602 984 ntBASIC23.74■■□□□ 1.39
PDLIM5Q96HC4 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PDLIM5Q96HC4 SMPD5-203ENST00000639008 1464 ntBASIC23.74■■□□□ 1.39
PDLIM5Q96HC4 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PDLIM5Q96HC4 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.74■■□□□ 1.39
PDLIM5Q96HC4 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.73■■□□□ 1.39
PDLIM5Q96HC4 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
PDLIM5Q96HC4 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
PDLIM5Q96HC4 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.73■■□□□ 1.39
PDLIM5Q96HC4 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC23.73■■□□□ 1.39
PDLIM5Q96HC4 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PDLIM5Q96HC4 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.73■■□□□ 1.39
PDLIM5Q96HC4 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PDLIM5Q96HC4 AC096887.2-201ENST00000623443 1957 ntBASIC23.72■■□□□ 1.39
PDLIM5Q96HC4 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PDLIM5Q96HC4 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.72■■□□□ 1.39
PDLIM5Q96HC4 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.72■■□□□ 1.39
PDLIM5Q96HC4 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PDLIM5Q96HC4 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PDLIM5Q96HC4 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PDLIM5Q96HC4 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PDLIM5Q96HC4 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.71■■□□□ 1.39
PDLIM5Q96HC4 MIR3960-201ENST00000583311 91 ntBASIC23.71■■□□□ 1.39
PDLIM5Q96HC4 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
PDLIM5Q96HC4 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
PDLIM5Q96HC4 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.7■■□□□ 1.38
PDLIM5Q96HC4 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PDLIM5Q96HC4 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
PDLIM5Q96HC4 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
PDLIM5Q96HC4 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.69■■□□□ 1.38
PDLIM5Q96HC4 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PDLIM5Q96HC4 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PDLIM5Q96HC4 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PDLIM5Q96HC4 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.68■■□□□ 1.38
PDLIM5Q96HC4 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.68■■□□□ 1.38
PDLIM5Q96HC4 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PDLIM5Q96HC4 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.68■■□□□ 1.38
PDLIM5Q96HC4 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PDLIM5Q96HC4 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
PDLIM5Q96HC4 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.68■■□□□ 1.38
PDLIM5Q96HC4 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PDLIM5Q96HC4 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
PDLIM5Q96HC4 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PDLIM5Q96HC4 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
PDLIM5Q96HC4 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.67■■□□□ 1.38
PDLIM5Q96HC4 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.67■■□□□ 1.38
PDLIM5Q96HC4 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PDLIM5Q96HC4 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PDLIM5Q96HC4 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PDLIM5Q96HC4 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PDLIM5Q96HC4 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.66■■□□□ 1.38
PDLIM5Q96HC4 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PDLIM5Q96HC4 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PDLIM5Q96HC4 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.66■■□□□ 1.38
PDLIM5Q96HC4 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.66■■□□□ 1.38
PDLIM5Q96HC4 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
PDLIM5Q96HC4 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PDLIM5Q96HC4 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PDLIM5Q96HC4 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PDLIM5Q96HC4 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PDLIM5Q96HC4 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PDLIM5Q96HC4 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.65■■□□□ 1.38
PDLIM5Q96HC4 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC23.65■■□□□ 1.38
PDLIM5Q96HC4 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
PDLIM5Q96HC4 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.38
PDLIM5Q96HC4 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.64■■□□□ 1.37
PDLIM5Q96HC4 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC23.64■■□□□ 1.37
PDLIM5Q96HC4 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC23.63■■□□□ 1.37
PDLIM5Q96HC4 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
PDLIM5Q96HC4 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PDLIM5Q96HC4 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PDLIM5Q96HC4 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PDLIM5Q96HC4 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
PDLIM5Q96HC4 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
PDLIM5Q96HC4 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PDLIM5Q96HC4 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
PDLIM5Q96HC4 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PDLIM5Q96HC4 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.62■■□□□ 1.37
PDLIM5Q96HC4 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PDLIM5Q96HC4 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
PDLIM5Q96HC4 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.61■■□□□ 1.37
PDLIM5Q96HC4 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.61■■□□□ 1.37
PDLIM5Q96HC4 RP9P-202ENST00000450133 1212 ntBASIC23.61■■□□□ 1.37
PDLIM5Q96HC4 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
PDLIM5Q96HC4 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.6■■□□□ 1.37
PDLIM5Q96HC4 GPX1-201ENST00000419349 1106 ntBASIC23.6■■□□□ 1.37
PDLIM5Q96HC4 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PDLIM5Q96HC4 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PDLIM5Q96HC4 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.6■■□□□ 1.37
PDLIM5Q96HC4 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
PDLIM5Q96HC4 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.59■■□□□ 1.37
PDLIM5Q96HC4 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.59■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms