RNA–Protein interactions for RNA: ENST00000247005.7

GDF1-201, Transcript of growth differentiation factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GDF1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDF1-201ENST00000247005 NISCHQ9Y2I1 1504 aa51.07■■■■■ 5.77
GDF1-201ENST00000247005 CCDC180Q9P1Z9 1646 aa43.56■■■■■ 4.56
GDF1-201ENST00000247005 SHROOM4Q9ULL8 1493 aa43.33■■■■■ 4.53
GDF1-201ENST00000247005 ZCCHC6Q5VYS8 1495 aaKnown RBP43.09■■■■■ 4.49
GDF1-201ENST00000247005 DCAF8L2P0C7V8 631 aa42.63■■■■■ 4.42
GDF1-201ENST00000247005 SUPT5HO00267 1087 aaKnown RBP42.27■■■■■ 4.36
GDF1-201ENST00000247005 DCAF1Q9Y4B6 1507 aa41.83■■■■■ 4.29
GDF1-201ENST00000247005 ABCC9O60706 1549 aa40.9■■■■■ 4.14
GDF1-201ENST00000247005 SCRIBQ14160 1630 aa40.86■■■■■ 4.13
GDF1-201ENST00000247005 CHIC1Q5VXU3 224 aa40.83■■■■■ 4.13
GDF1-201ENST00000247005 MYO15BQ96JP2 1530 aa40.78■■■■■ 4.12
GDF1-201ENST00000247005 NACADO15069 1562 aa40.42■■■■■ 4.06
GDF1-201ENST00000247005 RSF1Q96T23 1441 aaPredicted RBP40.27■■■■■ 4.04
GDF1-201ENST00000247005 CECR2Q9BXF3 1484 aa39.94■■■■□ 3.98
GDF1-201ENST00000247005 RB1CC1Q8TDY2 1594 aa39.86■■■■□ 3.97
GDF1-201ENST00000247005 MROH2BQ7Z745 1585 aa39.72■■■■□ 3.95
GDF1-201ENST00000247005 LOC105371045A0A1W2PR82 267 aa39.66■■■■□ 3.94
GDF1-201ENST00000247005 WIZO95785 1651 aa39.48■■■■□ 3.91
GDF1-201ENST00000247005 TRIM41Q8WV44 630 aa39.36■■■■□ 3.89
GDF1-201ENST00000247005 UNC13AQ9UPW8 1703 aa39.28■■■■□ 3.88
GDF1-201ENST00000247005 BAZ1AQ9NRL2 1556 aaPredicted RBP39.23■■■■□ 3.87
GDF1-201ENST00000247005 PCGF6Q9BYE7 350 aa39.1■■■■□ 3.85
GDF1-201ENST00000247005 FAM9AQ8IZU1 332 aaPredicted RBP39.09■■■■□ 3.85
GDF1-201ENST00000247005 PABPN1Q86U42 306 aaKnown RBP eCLIP39.08■■■■□ 3.85
GDF1-201ENST00000247005 SMARCA4P51532 1647 aa38.98■■■■□ 3.83
GDF1-201ENST00000247005 BICRAQ9NZM4 1560 aa38.85■■■■□ 3.81
GDF1-201ENST00000247005 EHMT2Q96KQ7 1210 aa38.83■■■■□ 3.81
GDF1-201ENST00000247005 TOP2AP11388 1531 aaKnown RBP38.8■■■■□ 3.8
GDF1-201ENST00000247005 HRCP23327 699 aa38.69■■■■□ 3.78
GDF1-201ENST00000247005 CCDC88BA6NC98 1476 aa38.69■■■■□ 3.78
GDF1-201ENST00000247005 EIF4G1Q04637 1599 aaKnown RBP38.67■■■■□ 3.78
GDF1-201ENST00000247005 SMARCA2P51531 1590 aa38.6■■■■□ 3.77
GDF1-201ENST00000247005 ABCC8Q09428 1581 aa38.45■■■■□ 3.75
GDF1-201ENST00000247005 TRIM26Q12899 539 aaPredicted RBP38.4■■■■□ 3.74
GDF1-201ENST00000247005 PEG3Q9GZU2 1588 aa38.22■■■■□ 3.71
GDF1-201ENST00000247005 ATAD2BQ9ULI0 1458 aa38.12■■■■□ 3.69
GDF1-201ENST00000247005 PPARGC1BQ86YN6 1023 aaKnown RBP38.09■■■■□ 3.69
GDF1-201ENST00000247005 SOGA1O94964 1423 aa38.01■■■■□ 3.68
GDF1-201ENST00000247005 BAZ1BQ9UIG0 1483 aaKnown RBP37.99■■■■□ 3.67
GDF1-201ENST00000247005 RUSC2Q8N2Y8 1516 aa37.87■■■■□ 3.65
GDF1-201ENST00000247005 WRNQ14191 1432 aaPredicted RBP eCLIP37.83■■■■□ 3.65
GDF1-201ENST00000247005 CSRNP3Q8WYN3 585 aa37.74■■■■□ 3.63
GDF1-201ENST00000247005 SYNJ1O43426 1573 aa37.66■■■■□ 3.62
GDF1-201ENST00000247005 EEA1Q15075 1411 aa37.61■■■■□ 3.61
GDF1-201ENST00000247005 UBTFP17480 764 aaKnown RBP37.58■■■■□ 3.61
GDF1-201ENST00000247005 CEP162Q5TB80 1403 aa37.57■■■■□ 3.61
GDF1-201ENST00000247005 TNIKQ9UKE5 1360 aa37.52■■■■□ 3.6
GDF1-201ENST00000247005 NCAPD3P42695 1498 aa37.44■■■■□ 3.58
GDF1-201ENST00000247005 TTBK1Q5TCY1 1321 aaPredicted RBP37.43■■■■□ 3.58
GDF1-201ENST00000247005 GOLGA3Q08378 1498 aa37.38■■■■□ 3.57
GDF1-201ENST00000247005 HMGXB3Q12766 1538 aa37.36■■■■□ 3.57
GDF1-201ENST00000247005 ZEB1P37275 1124 aaPredicted RBP37.26■■■■□ 3.55
GDF1-201ENST00000247005 CEP164Q9UPV0 1460 aa37.21■■■■□ 3.55
GDF1-201ENST00000247005 TOP2BQ02880 1626 aa37.2■■■■□ 3.55
GDF1-201ENST00000247005 KIF21BO75037 1637 aa37.13■■■■□ 3.53
GDF1-201ENST00000247005 RAPGEF2Q9Y4G8 1499 aa37.09■■■■□ 3.53
GDF1-201ENST00000247005 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.06■■■■□ 3.52
GDF1-201ENST00000247005 RANGAP1P46060 587 aaPredicted RBP37.05■■■■□ 3.52
GDF1-201ENST00000247005 BIVM-ERCC5R4GMW8 1640 aa37.05■■■■□ 3.52
GDF1-201ENST00000247005 CFTRP13569 1480 aa37.02■■■■□ 3.52
GDF1-201ENST00000247005 CUX1P39880 1505 aa36.99■■■■□ 3.51
GDF1-201ENST00000247005 CLIP1P30622 1438 aa36.98■■■■□ 3.51
GDF1-201ENST00000247005 CCER1Q8TC90 406 aaPredicted RBP36.87■■■■□ 3.49
GDF1-201ENST00000247005 CC2D2AQ9P2K1 1620 aa36.78■■■■□ 3.48
GDF1-201ENST00000247005 PRXQ9BXM0 1461 aa36.73■■■■□ 3.47
GDF1-201ENST00000247005 VPS8Q8N3P4 1428 aa36.73■■■■□ 3.47
GDF1-201ENST00000247005 CADPSQ9ULU8 1353 aa36.72■■■■□ 3.47
GDF1-201ENST00000247005 KIF27Q86VH2 1401 aa36.69■■■■□ 3.46
GDF1-201ENST00000247005 ERICH3Q5RHP9 1530 aa36.62■■■■□ 3.45
GDF1-201ENST00000247005 PRDM2Q13029 1718 aa36.59■■■■□ 3.45
GDF1-201ENST00000247005 APLP2Q06481 763 aa36.58■■■■□ 3.45
GDF1-201ENST00000247005 HNRNPUL2Q1KMD3 747 aaKnown RBP36.49■■■■□ 3.43
GDF1-201ENST00000247005 CUX2O14529 1486 aa36.47■■■■□ 3.43
GDF1-201ENST00000247005 ARAP1Q96P48 1450 aa36.43■■■■□ 3.42
GDF1-201ENST00000247005 FGD5Q6ZNL6 1462 aa36.41■■■■□ 3.42
GDF1-201ENST00000247005 IGF1RP08069 1367 aa36.38■■■■□ 3.41
GDF1-201ENST00000247005 FANCD2Q9BXW9 1451 aa36.37■■■■□ 3.41
GDF1-201ENST00000247005 NESP48681 1621 aa36.32■■■■□ 3.41
GDF1-201ENST00000247005 KANK4Q5T7N3 995 aaPredicted RBP36.26■■■■□ 3.4
GDF1-201ENST00000247005 ARHGAP35Q9NRY4 1499 aa36.21■■■■□ 3.39
GDF1-201ENST00000247005 CARMIL1Q5VZK9 1371 aa36.21■■■■□ 3.39
GDF1-201ENST00000247005 DNAJC5BQ9UF47 199 aa36.16■■■■□ 3.38
GDF1-201ENST00000247005 RAD54L2Q9Y4B4 1467 aa36.15■■■■□ 3.38
GDF1-201ENST00000247005 TOPBP1Q92547 1522 aa36.07■■■■□ 3.37
GDF1-201ENST00000247005 DNMBPQ6XZF7 1577 aa36.07■■■■□ 3.37
GDF1-201ENST00000247005 POLA1P09884 1462 aaPredicted RBP36.04■■■■□ 3.36
GDF1-201ENST00000247005 ABCA10Q8WWZ4 1543 aa35.94■■■■□ 3.34
GDF1-201ENST00000247005 P3H3Q8IVL6 736 aa35.92■■■■□ 3.34
GDF1-201ENST00000247005 URB2Q14146 1524 aaKnown RBP35.88■■■■□ 3.33
GDF1-201ENST00000247005 LAMC3Q9Y6N6 1575 aa35.87■■■■□ 3.33
GDF1-201ENST00000247005 DIEXFQ68CQ4 756 aaKnown RBP35.86■■■■□ 3.33
GDF1-201ENST00000247005 RRBP1Q9P2E9 1410 aaKnown RBP35.78■■■■□ 3.32
GDF1-201ENST00000247005 TDRD9Q8NDG6 1382 aaKnown RBP35.75■■■■□ 3.31
GDF1-201ENST00000247005 ITGAEP38570 1179 aa35.74■■■■□ 3.31
GDF1-201ENST00000247005 ATP1B4Q9UN42 357 aaPredicted RBP35.73■■■■□ 3.31
GDF1-201ENST00000247005 ZNF316A6NFI3 1004 aaPredicted RBP35.71■■■■□ 3.31
GDF1-201ENST00000247005 PDS5BQ9NTI5 1447 aa35.71■■■■□ 3.31
GDF1-201ENST00000247005 CCNB3Q8WWL7 1395 aa35.71■■■■□ 3.31
GDF1-201ENST00000247005 TIAM1Q13009 1591 aa35.69■■■■□ 3.3
GDF1-201ENST00000247005 FHOD3Q2V2M9 1422 aa35.67■■■■□ 3.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms