Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHB1Q9Y5F3 RARRES2P1-201ENST00000474487 481 ntBASIC24.39■■□□□ 1.49
PCDHB1Q9Y5F3 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC24.39■■□□□ 1.49
PCDHB1Q9Y5F3 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHB1Q9Y5F3 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHB1Q9Y5F3 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC24.38■■□□□ 1.49
PCDHB1Q9Y5F3 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC24.38■■□□□ 1.49
PCDHB1Q9Y5F3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHB1Q9Y5F3 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC24.38■■□□□ 1.49
PCDHB1Q9Y5F3 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHB1Q9Y5F3 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC24.37■■□□□ 1.49
PCDHB1Q9Y5F3 ECEL1P2-201ENST00000461596 1295 ntBASIC24.37■■□□□ 1.49
PCDHB1Q9Y5F3 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC24.37■■□□□ 1.49
PCDHB1Q9Y5F3 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC24.37■■□□□ 1.49
PCDHB1Q9Y5F3 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHB1Q9Y5F3 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHB1Q9Y5F3 MED25-210ENST00000612854 801 ntTSL 5 BASIC24.36■■□□□ 1.49
PCDHB1Q9Y5F3 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHB1Q9Y5F3 MED25-214ENST00000622402 642 ntTSL 5 BASIC24.36■■□□□ 1.49
PCDHB1Q9Y5F3 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHB1Q9Y5F3 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC24.35■■□□□ 1.49
PCDHB1Q9Y5F3 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC24.35■■□□□ 1.49
PCDHB1Q9Y5F3 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHB1Q9Y5F3 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC24.35■■□□□ 1.49
PCDHB1Q9Y5F3 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHB1Q9Y5F3 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
PCDHB1Q9Y5F3 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHB1Q9Y5F3 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHB1Q9Y5F3 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHB1Q9Y5F3 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC24.34■■□□□ 1.49
PCDHB1Q9Y5F3 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHB1Q9Y5F3 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.33■■□□□ 1.49
PCDHB1Q9Y5F3 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC24.33■■□□□ 1.49
PCDHB1Q9Y5F3 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC24.33■■□□□ 1.49
PCDHB1Q9Y5F3 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
PCDHB1Q9Y5F3 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHB1Q9Y5F3 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC24.32■■□□□ 1.48
PCDHB1Q9Y5F3 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHB1Q9Y5F3 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHB1Q9Y5F3 MOB2-207ENST00000614710 705 ntTSL 5 BASIC24.32■■□□□ 1.48
PCDHB1Q9Y5F3 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHB1Q9Y5F3 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
PCDHB1Q9Y5F3 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC24.31■■□□□ 1.48
PCDHB1Q9Y5F3 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHB1Q9Y5F3 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC24.31■■□□□ 1.48
PCDHB1Q9Y5F3 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC24.31■■□□□ 1.48
PCDHB1Q9Y5F3 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHB1Q9Y5F3 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHB1Q9Y5F3 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHB1Q9Y5F3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHB1Q9Y5F3 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHB1Q9Y5F3 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC24.29■■□□□ 1.48
PCDHB1Q9Y5F3 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC24.29■■□□□ 1.48
PCDHB1Q9Y5F3 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC24.29■■□□□ 1.48
PCDHB1Q9Y5F3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHB1Q9Y5F3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHB1Q9Y5F3 AL157400.5-201ENST00000507624 621 ntBASIC24.28■■□□□ 1.48
PCDHB1Q9Y5F3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.28■■□□□ 1.48
PCDHB1Q9Y5F3 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHB1Q9Y5F3 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHB1Q9Y5F3 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC24.27■■□□□ 1.48
PCDHB1Q9Y5F3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHB1Q9Y5F3 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC24.27■■□□□ 1.48
PCDHB1Q9Y5F3 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC24.27■■□□□ 1.48
PCDHB1Q9Y5F3 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
PCDHB1Q9Y5F3 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHB1Q9Y5F3 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC24.26■■□□□ 1.47
PCDHB1Q9Y5F3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC24.26■■□□□ 1.47
PCDHB1Q9Y5F3 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHB1Q9Y5F3 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC24.25■■□□□ 1.47
PCDHB1Q9Y5F3 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHB1Q9Y5F3 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHB1Q9Y5F3 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHB1Q9Y5F3 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHB1Q9Y5F3 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC24.25■■□□□ 1.47
PCDHB1Q9Y5F3 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC24.25■■□□□ 1.47
PCDHB1Q9Y5F3 AL359504.2-201ENST00000605506 1601 ntBASIC24.24■■□□□ 1.47
PCDHB1Q9Y5F3 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHB1Q9Y5F3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHB1Q9Y5F3 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHB1Q9Y5F3 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHB1Q9Y5F3 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHB1Q9Y5F3 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHB1Q9Y5F3 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHB1Q9Y5F3 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.23■■□□□ 1.47
PCDHB1Q9Y5F3 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC24.23■■□□□ 1.47
PCDHB1Q9Y5F3 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC24.23■■□□□ 1.47
PCDHB1Q9Y5F3 AC129492.7-201ENST00000622992 756 ntBASIC24.23■■□□□ 1.47
PCDHB1Q9Y5F3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHB1Q9Y5F3 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC24.23■■□□□ 1.47
PCDHB1Q9Y5F3 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHB1Q9Y5F3 DUX4L18-201ENST00000553347 1267 ntBASIC24.22■■□□□ 1.47
PCDHB1Q9Y5F3 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHB1Q9Y5F3 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHB1Q9Y5F3 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHB1Q9Y5F3 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHB1Q9Y5F3 AC091060.1-201ENST00000623524 1766 ntBASIC24.21■■□□□ 1.47
PCDHB1Q9Y5F3 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
PCDHB1Q9Y5F3 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHB1Q9Y5F3 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms