RNA–Protein interactions for RNA: ENST00000495799.5

PPP1R3F-205, Transcript of protein phosphatase 1 regulatory subunit 3F, humanhuman

TSL 1 (best) BASIC

Gene PPP1R3F, Length 1,537 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP1R3F-205ENST00000495799 NISCHQ9Y2I1 1504 aa55.86■■■■■ 6.53
PPP1R3F-205ENST00000495799 CCDC180Q9P1Z9 1646 aa49■■■■■ 5.44
PPP1R3F-205ENST00000495799 ZCCHC6Q5VYS8 1495 aaKnown RBP46.9■■■■■ 5.1
PPP1R3F-205ENST00000495799 ABCC9O60706 1549 aa46.34■■■■■ 5.01
PPP1R3F-205ENST00000495799 DCAF1Q9Y4B6 1507 aa46.32■■■■■ 5
PPP1R3F-205ENST00000495799 DCAF8L2P0C7V8 631 aa46.06■■■■■ 4.96
PPP1R3F-205ENST00000495799 MYO15BQ96JP2 1530 aa45.9■■■■■ 4.94
PPP1R3F-205ENST00000495799 NACADO15069 1562 aa45.66■■■■■ 4.9
PPP1R3F-205ENST00000495799 RB1CC1Q8TDY2 1594 aa45.34■■■■■ 4.85
PPP1R3F-205ENST00000495799 SHROOM4Q9ULL8 1493 aa45.17■■■■■ 4.82
PPP1R3F-205ENST00000495799 SCRIBQ14160 1630 aa44.84■■■■■ 4.77
PPP1R3F-205ENST00000495799 UNC13AQ9UPW8 1703 aa44.31■■■■■ 4.68
PPP1R3F-205ENST00000495799 BICRAQ9NZM4 1560 aa43.83■■■■■ 4.61
PPP1R3F-205ENST00000495799 PABPN1Q86U42 306 aaKnown RBP eCLIP43.55■■■■■ 4.56
PPP1R3F-205ENST00000495799 SUPT5HO00267 1087 aaKnown RBP43.35■■■■■ 4.53
PPP1R3F-205ENST00000495799 CECR2Q9BXF3 1484 aa43.3■■■■■ 4.52
PPP1R3F-205ENST00000495799 BAZ1AQ9NRL2 1556 aaPredicted RBP43.23■■■■■ 4.51
PPP1R3F-205ENST00000495799 RSF1Q96T23 1441 aaPredicted RBP43.16■■■■■ 4.5
PPP1R3F-205ENST00000495799 MROH2BQ7Z745 1585 aa43.07■■■■■ 4.49
PPP1R3F-205ENST00000495799 SMARCA4P51532 1647 aa43.03■■■■■ 4.48
PPP1R3F-205ENST00000495799 WIZO95785 1651 aa42.72■■■■■ 4.43
PPP1R3F-205ENST00000495799 EIF4G1Q04637 1599 aaKnown RBP42.59■■■■■ 4.41
PPP1R3F-205ENST00000495799 PEG3Q9GZU2 1588 aa42.56■■■■■ 4.4
PPP1R3F-205ENST00000495799 SMARCA2P51531 1590 aa42.43■■■■■ 4.38
PPP1R3F-205ENST00000495799 TOP2AP11388 1531 aaKnown RBP42.38■■■■■ 4.37
PPP1R3F-205ENST00000495799 ATAD2BQ9ULI0 1458 aa42.35■■■■■ 4.37
PPP1R3F-205ENST00000495799 BAZ1BQ9UIG0 1483 aaKnown RBP42.14■■■■■ 4.34
PPP1R3F-205ENST00000495799 NCAPD3P42695 1498 aa42.07■■■■■ 4.32
PPP1R3F-205ENST00000495799 HMGXB3Q12766 1538 aa42.06■■■■■ 4.32
PPP1R3F-205ENST00000495799 CC2D2AQ9P2K1 1620 aa42■■■■■ 4.31
PPP1R3F-205ENST00000495799 CCDC88BA6NC98 1476 aa41.84■■■■■ 4.29
PPP1R3F-205ENST00000495799 CHIC1Q5VXU3 224 aa41.39■■■■■ 4.22
PPP1R3F-205ENST00000495799 CFTRP13569 1480 aa41.05■■■■■ 4.16
PPP1R3F-205ENST00000495799 PRDM2Q13029 1718 aa40.96■■■■■ 4.15
PPP1R3F-205ENST00000495799 CADPSQ9ULU8 1353 aa40.95■■■■■ 4.15
PPP1R3F-205ENST00000495799 DNAJC5BQ9UF47 199 aa40.93■■■■■ 4.14
PPP1R3F-205ENST00000495799 TRIM41Q8WV44 630 aa40.88■■■■■ 4.14
PPP1R3F-205ENST00000495799 ABCC8Q09428 1581 aa40.83■■■■■ 4.13
PPP1R3F-205ENST00000495799 LAMC3Q9Y6N6 1575 aa40.76■■■■■ 4.12
PPP1R3F-205ENST00000495799 WRNQ14191 1432 aaPredicted RBP eCLIP40.69■■■■■ 4.11
PPP1R3F-205ENST00000495799 NESP48681 1621 aa40.55■■■■■ 4.08
PPP1R3F-205ENST00000495799 FANCD2Q9BXW9 1451 aa40.5■■■■■ 4.07
PPP1R3F-205ENST00000495799 SYNJ1O43426 1573 aa40.49■■■■■ 4.07
PPP1R3F-205ENST00000495799 TOP2BQ02880 1626 aa40.44■■■■■ 4.06
PPP1R3F-205ENST00000495799 BIVM-ERCC5R4GMW8 1640 aa40.44■■■■■ 4.06
PPP1R3F-205ENST00000495799 PDS5BQ9NTI5 1447 aa40.43■■■■■ 4.06
PPP1R3F-205ENST00000495799 CEP164Q9UPV0 1460 aa40.33■■■■■ 4.05
PPP1R3F-205ENST00000495799 CUX1P39880 1505 aa40.32■■■■■ 4.04
PPP1R3F-205ENST00000495799 KIF21AQ7Z4S6 1674 aa40.19■■■■■ 4.02
PPP1R3F-205ENST00000495799 DNMBPQ6XZF7 1577 aa40.15■■■■■ 4.02
PPP1R3F-205ENST00000495799 EEA1Q15075 1411 aa40.1■■■■■ 4.01
PPP1R3F-205ENST00000495799 TOPBP1Q92547 1522 aa40.03■■■■■ 4
PPP1R3F-205ENST00000495799 FAM9AQ8IZU1 332 aaPredicted RBP39.99■■■■□ 3.99
PPP1R3F-205ENST00000495799 SOGA1O94964 1423 aa39.98■■■■□ 3.99
PPP1R3F-205ENST00000495799 URB2Q14146 1524 aaKnown RBP39.96■■■■□ 3.99
PPP1R3F-205ENST00000495799 FGD5Q6ZNL6 1462 aa39.95■■■■□ 3.99
PPP1R3F-205ENST00000495799 MRC2Q9UBG0 1479 aa39.9■■■■□ 3.98
PPP1R3F-205ENST00000495799 ERCC6Q03468 1493 aa39.86■■■■□ 3.97
PPP1R3F-205ENST00000495799 RUSC2Q8N2Y8 1516 aa39.8■■■■□ 3.96
PPP1R3F-205ENST00000495799 POLA1P09884 1462 aaPredicted RBP39.8■■■■□ 3.96
PPP1R3F-205ENST00000495799 CSRNP3Q8WYN3 585 aa39.74■■■■□ 3.95
PPP1R3F-205ENST00000495799 KIF27Q86VH2 1401 aa39.74■■■■□ 3.95
PPP1R3F-205ENST00000495799 WDR62O43379 1518 aa39.7■■■■□ 3.95
PPP1R3F-205ENST00000495799 LOC105371045A0A1W2PR82 267 aa39.68■■■■□ 3.94
PPP1R3F-205ENST00000495799 ABCA10Q8WWZ4 1543 aa39.63■■■■□ 3.94
PPP1R3F-205ENST00000495799 CUX2O14529 1486 aa39.63■■■■□ 3.94
PPP1R3F-205ENST00000495799 THOC2Q8NI27 1593 aaKnown RBP39.62■■■■□ 3.93
PPP1R3F-205ENST00000495799 RAD54L2Q9Y4B4 1467 aa39.59■■■■□ 3.93
PPP1R3F-205ENST00000495799 WDR97A6NE52 1622 aa39.56■■■■□ 3.92
PPP1R3F-205ENST00000495799 KIF21BO75037 1637 aa39.54■■■■□ 3.92
PPP1R3F-205ENST00000495799 GOLGA3Q08378 1498 aa39.46■■■■□ 3.91
PPP1R3F-205ENST00000495799 TARBP1Q13395 1621 aaKnown RBP39.45■■■■□ 3.91
PPP1R3F-205ENST00000495799 IFT140Q96RY7 1462 aa39.39■■■■□ 3.9
PPP1R3F-205ENST00000495799 ERICH3Q5RHP9 1530 aa39.35■■■■□ 3.89
PPP1R3F-205ENST00000495799 ABCA5Q8WWZ7 1642 aa39.35■■■■□ 3.89
PPP1R3F-205ENST00000495799 PRXQ9BXM0 1461 aa39.34■■■■□ 3.89
PPP1R3F-205ENST00000495799 EHMT2Q96KQ7 1210 aa39.34■■■■□ 3.89
PPP1R3F-205ENST00000495799 IGF1RP08069 1367 aa39.31■■■■□ 3.88
PPP1R3F-205ENST00000495799 GAPVD1Q14C86 1478 aa39.26■■■■□ 3.87
PPP1R3F-205ENST00000495799 TNIKQ9UKE5 1360 aa39.24■■■■□ 3.87
PPP1R3F-205ENST00000495799 RAPGEF2Q9Y4G8 1499 aa39.23■■■■□ 3.87
PPP1R3F-205ENST00000495799 TDRD9Q8NDG6 1382 aaKnown RBP39.22■■■■□ 3.87
PPP1R3F-205ENST00000495799 CUL7Q14999 1698 aa39.22■■■■□ 3.87
PPP1R3F-205ENST00000495799 UBTFP17480 764 aaKnown RBP39.19■■■■□ 3.86
PPP1R3F-205ENST00000495799 CARMIL1Q5VZK9 1371 aa39.16■■■■□ 3.86
PPP1R3F-205ENST00000495799 PBRM1Q86U86 1689 aa39.11■■■■□ 3.85
PPP1R3F-205ENST00000495799 AQRO60306 1485 aaKnown RBP eCLIP39.03■■■■□ 3.84
PPP1R3F-205ENST00000495799 GRIN2BQ13224 1484 aa39.03■■■■□ 3.84
PPP1R3F-205ENST00000495799 ZNF608Q9ULD9 1512 aaPredicted RBP39.02■■■■□ 3.84
PPP1R3F-205ENST00000495799 EIF4G3O43432 1585 aaKnown RBP39■■■■□ 3.83
PPP1R3F-205ENST00000495799 CEP162Q5TB80 1403 aa38.97■■■■□ 3.83
PPP1R3F-205ENST00000495799 ADAMTS12P58397 1594 aa38.86■■■■□ 3.81
PPP1R3F-205ENST00000495799 FHAD1B1AJZ9 1412 aa38.85■■■■□ 3.81
PPP1R3F-205ENST00000495799 MAGI1Q96QZ7 1491 aaPredicted RBP38.76■■■■□ 3.8
PPP1R3F-205ENST00000495799 CLIP1P30622 1438 aa38.76■■■■□ 3.79
PPP1R3F-205ENST00000495799 SNAPC4Q5SXM2 1469 aa38.74■■■■□ 3.79
PPP1R3F-205ENST00000495799 CTTNBP2Q8WZ74 1663 aa38.71■■■■□ 3.79
PPP1R3F-205ENST00000495799 SYNJ2O15056 1496 aa38.57■■■■□ 3.77
PPP1R3F-205ENST00000495799 GRIN2AQ12879 1464 aa38.52■■■■□ 3.76
PPP1R3F-205ENST00000495799 RANGAP1P46060 587 aaPredicted RBP38.49■■■■□ 3.75
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms