RNA–Protein interactions for RNA: ENST00000459639.5

U2AF1-204, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best) BASIC

Gene U2AF1, Length 1,675 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-204ENST00000459639 NISCHQ9Y2I1 1504 aa55.95■■■■■ 6.55
U2AF1-204ENST00000459639 CCDC180Q9P1Z9 1646 aa49.03■■■■■ 5.44
U2AF1-204ENST00000459639 ZCCHC6Q5VYS8 1495 aaKnown RBP47■■■■■ 5.11
U2AF1-204ENST00000459639 DCAF1Q9Y4B6 1507 aa46.36■■■■■ 5.01
U2AF1-204ENST00000459639 ABCC9O60706 1549 aa46.29■■■■■ 5
U2AF1-204ENST00000459639 DCAF8L2P0C7V8 631 aa46.01■■■■■ 4.96
U2AF1-204ENST00000459639 MYO15BQ96JP2 1530 aa45.9■■■■■ 4.94
U2AF1-204ENST00000459639 NACADO15069 1562 aa45.64■■■■■ 4.9
U2AF1-204ENST00000459639 SHROOM4Q9ULL8 1493 aa45.31■■■■■ 4.84
U2AF1-204ENST00000459639 RB1CC1Q8TDY2 1594 aa45.28■■■■■ 4.84
U2AF1-204ENST00000459639 SCRIBQ14160 1630 aa44.91■■■■■ 4.78
U2AF1-204ENST00000459639 UNC13AQ9UPW8 1703 aa44.41■■■■■ 4.7
U2AF1-204ENST00000459639 BICRAQ9NZM4 1560 aa43.89■■■■■ 4.62
U2AF1-204ENST00000459639 PABPN1Q86U42 306 aaKnown RBP eCLIP43.51■■■■■ 4.56
U2AF1-204ENST00000459639 SUPT5HO00267 1087 aaKnown RBP43.48■■■■■ 4.55
U2AF1-204ENST00000459639 CECR2Q9BXF3 1484 aa43.41■■■■■ 4.54
U2AF1-204ENST00000459639 RSF1Q96T23 1441 aaPredicted RBP43.28■■■■■ 4.52
U2AF1-204ENST00000459639 BAZ1AQ9NRL2 1556 aaPredicted RBP43.26■■■■■ 4.52
U2AF1-204ENST00000459639 MROH2BQ7Z745 1585 aa43.18■■■■■ 4.5
U2AF1-204ENST00000459639 SMARCA4P51532 1647 aa43.1■■■■■ 4.49
U2AF1-204ENST00000459639 WIZO95785 1651 aa42.85■■■■■ 4.45
U2AF1-204ENST00000459639 PEG3Q9GZU2 1588 aa42.62■■■■■ 4.41
U2AF1-204ENST00000459639 EIF4G1Q04637 1599 aaKnown RBP42.57■■■■■ 4.41
U2AF1-204ENST00000459639 TOP2AP11388 1531 aaKnown RBP42.45■■■■■ 4.39
U2AF1-204ENST00000459639 SMARCA2P51531 1590 aa42.42■■■■■ 4.38
U2AF1-204ENST00000459639 ATAD2BQ9ULI0 1458 aa42.37■■■■■ 4.37
U2AF1-204ENST00000459639 BAZ1BQ9UIG0 1483 aaKnown RBP42.13■■■■■ 4.33
U2AF1-204ENST00000459639 HMGXB3Q12766 1538 aa42.06■■■■■ 4.32
U2AF1-204ENST00000459639 NCAPD3P42695 1498 aa42.05■■■■■ 4.32
U2AF1-204ENST00000459639 CC2D2AQ9P2K1 1620 aa41.98■■■■■ 4.31
U2AF1-204ENST00000459639 CCDC88BA6NC98 1476 aa41.92■■■■■ 4.3
U2AF1-204ENST00000459639 CHIC1Q5VXU3 224 aa41.58■■■■■ 4.25
U2AF1-204ENST00000459639 CFTRP13569 1480 aa41.07■■■■■ 4.17
U2AF1-204ENST00000459639 PRDM2Q13029 1718 aa41.04■■■■■ 4.16
U2AF1-204ENST00000459639 ABCC8Q09428 1581 aa40.98■■■■■ 4.15
U2AF1-204ENST00000459639 TRIM41Q8WV44 630 aa40.96■■■■■ 4.15
U2AF1-204ENST00000459639 CADPSQ9ULU8 1353 aa40.92■■■■■ 4.14
U2AF1-204ENST00000459639 DNAJC5BQ9UF47 199 aa40.87■■■■■ 4.13
U2AF1-204ENST00000459639 WRNQ14191 1432 aaPredicted RBP eCLIP40.76■■■■■ 4.12
U2AF1-204ENST00000459639 LAMC3Q9Y6N6 1575 aa40.73■■■■■ 4.11
U2AF1-204ENST00000459639 SYNJ1O43426 1573 aa40.63■■■■■ 4.1
U2AF1-204ENST00000459639 NESP48681 1621 aa40.58■■■■■ 4.09
U2AF1-204ENST00000459639 BIVM-ERCC5R4GMW8 1640 aa40.54■■■■■ 4.08
U2AF1-204ENST00000459639 TOP2BQ02880 1626 aa40.53■■■■■ 4.08
U2AF1-204ENST00000459639 FANCD2Q9BXW9 1451 aa40.49■■■■■ 4.07
U2AF1-204ENST00000459639 CUX1P39880 1505 aa40.41■■■■■ 4.06
U2AF1-204ENST00000459639 PDS5BQ9NTI5 1447 aa40.33■■■■■ 4.05
U2AF1-204ENST00000459639 CEP164Q9UPV0 1460 aa40.28■■■■■ 4.04
U2AF1-204ENST00000459639 KIF21AQ7Z4S6 1674 aa40.23■■■■■ 4.03
U2AF1-204ENST00000459639 DNMBPQ6XZF7 1577 aa40.17■■■■■ 4.02
U2AF1-204ENST00000459639 EEA1Q15075 1411 aa40.14■■■■■ 4.02
U2AF1-204ENST00000459639 SOGA1O94964 1423 aa40.12■■■■■ 4.01
U2AF1-204ENST00000459639 FAM9AQ8IZU1 332 aaPredicted RBP40.11■■■■■ 4.01
U2AF1-204ENST00000459639 TOPBP1Q92547 1522 aa40.06■■■■■ 4
U2AF1-204ENST00000459639 URB2Q14146 1524 aaKnown RBP40■■■■□ 3.99
U2AF1-204ENST00000459639 FGD5Q6ZNL6 1462 aa39.99■■■■□ 3.99
U2AF1-204ENST00000459639 RUSC2Q8N2Y8 1516 aa39.98■■■■□ 3.99
U2AF1-204ENST00000459639 LOC105371045A0A1W2PR82 267 aa39.89■■■■□ 3.98
U2AF1-204ENST00000459639 MRC2Q9UBG0 1479 aa39.85■■■■□ 3.97
U2AF1-204ENST00000459639 POLA1P09884 1462 aaPredicted RBP39.83■■■■□ 3.97
U2AF1-204ENST00000459639 CSRNP3Q8WYN3 585 aa39.8■■■■□ 3.96
U2AF1-204ENST00000459639 KIF27Q86VH2 1401 aa39.75■■■■□ 3.95
U2AF1-204ENST00000459639 ERCC6Q03468 1493 aa39.75■■■■□ 3.95
U2AF1-204ENST00000459639 WDR62O43379 1518 aa39.69■■■■□ 3.94
U2AF1-204ENST00000459639 ABCA10Q8WWZ4 1543 aa39.67■■■■□ 3.94
U2AF1-204ENST00000459639 CUX2O14529 1486 aa39.67■■■■□ 3.94
U2AF1-204ENST00000459639 KIF21BO75037 1637 aa39.67■■■■□ 3.94
U2AF1-204ENST00000459639 WDR97A6NE52 1622 aa39.66■■■■□ 3.94
U2AF1-204ENST00000459639 RAD54L2Q9Y4B4 1467 aa39.64■■■■□ 3.94
U2AF1-204ENST00000459639 THOC2Q8NI27 1593 aaKnown RBP39.63■■■■□ 3.93
U2AF1-204ENST00000459639 GOLGA3Q08378 1498 aa39.55■■■■□ 3.92
U2AF1-204ENST00000459639 TARBP1Q13395 1621 aaKnown RBP39.51■■■■□ 3.92
U2AF1-204ENST00000459639 EHMT2Q96KQ7 1210 aa39.48■■■■□ 3.91
U2AF1-204ENST00000459639 PRXQ9BXM0 1461 aa39.45■■■■□ 3.91
U2AF1-204ENST00000459639 ERICH3Q5RHP9 1530 aa39.43■■■■□ 3.9
U2AF1-204ENST00000459639 ABCA5Q8WWZ7 1642 aa39.41■■■■□ 3.9
U2AF1-204ENST00000459639 IGF1RP08069 1367 aa39.36■■■■□ 3.89
U2AF1-204ENST00000459639 RAPGEF2Q9Y4G8 1499 aa39.35■■■■□ 3.89
U2AF1-204ENST00000459639 TNIKQ9UKE5 1360 aa39.35■■■■□ 3.89
U2AF1-204ENST00000459639 IFT140Q96RY7 1462 aa39.34■■■■□ 3.89
U2AF1-204ENST00000459639 GAPVD1Q14C86 1478 aa39.26■■■■□ 3.87
U2AF1-204ENST00000459639 CUL7Q14999 1698 aa39.25■■■■□ 3.87
U2AF1-204ENST00000459639 UBTFP17480 764 aaKnown RBP39.23■■■■□ 3.87
U2AF1-204ENST00000459639 TDRD9Q8NDG6 1382 aaKnown RBP39.23■■■■□ 3.87
U2AF1-204ENST00000459639 CARMIL1Q5VZK9 1371 aa39.17■■■■□ 3.86
U2AF1-204ENST00000459639 PBRM1Q86U86 1689 aa39.16■■■■□ 3.86
U2AF1-204ENST00000459639 CEP162Q5TB80 1403 aa39.11■■■■□ 3.85
U2AF1-204ENST00000459639 ZNF608Q9ULD9 1512 aaPredicted RBP39.06■■■■□ 3.84
U2AF1-204ENST00000459639 AQRO60306 1485 aaKnown RBP eCLIP39.03■■■■□ 3.84
U2AF1-204ENST00000459639 EIF4G3O43432 1585 aaKnown RBP39.03■■■■□ 3.84
U2AF1-204ENST00000459639 GRIN2BQ13224 1484 aa39■■■■□ 3.83
U2AF1-204ENST00000459639 ADAMTS12P58397 1594 aa38.91■■■■□ 3.82
U2AF1-204ENST00000459639 CLIP1P30622 1438 aa38.85■■■■□ 3.81
U2AF1-204ENST00000459639 FHAD1B1AJZ9 1412 aa38.84■■■■□ 3.81
U2AF1-204ENST00000459639 CTTNBP2Q8WZ74 1663 aa38.81■■■■□ 3.8
U2AF1-204ENST00000459639 SNAPC4Q5SXM2 1469 aa38.74■■■■□ 3.79
U2AF1-204ENST00000459639 MAGI1Q96QZ7 1491 aaPredicted RBP38.72■■■■□ 3.79
U2AF1-204ENST00000459639 RANGAP1P46060 587 aaPredicted RBP38.55■■■■□ 3.76
U2AF1-204ENST00000459639 SYNJ2O15056 1496 aa38.55■■■■□ 3.76
U2AF1-204ENST00000459639 ARHGAP35Q9NRY4 1499 aa38.54■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms