Protein–RNA interactions for Protein: A0A0B4J1U6

TRBV9, T-cell receptor beta variable 9 (Fragment), humanhuman

Predictions only

Length 114 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRBV9A0A0B4J1U6 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRBV9A0A0B4J1U6 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRBV9A0A0B4J1U6 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRBV9A0A0B4J1U6 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRBV9A0A0B4J1U6 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRBV9A0A0B4J1U6 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRBV9A0A0B4J1U6 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRBV9A0A0B4J1U6 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRBV9A0A0B4J1U6 AC093323.1-202ENST00000635031 2045 ntBASIC19.3■□□□□ 0.68
TRBV9A0A0B4J1U6 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRBV9A0A0B4J1U6 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRBV9A0A0B4J1U6 AL359258.2-201ENST00000564063 1566 ntBASIC19.29■□□□□ 0.68
TRBV9A0A0B4J1U6 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.29■□□□□ 0.68
TRBV9A0A0B4J1U6 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRBV9A0A0B4J1U6 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC19.29■□□□□ 0.68
TRBV9A0A0B4J1U6 MED25-210ENST00000612854 801 ntTSL 5 BASIC19.29■□□□□ 0.68
TRBV9A0A0B4J1U6 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRBV9A0A0B4J1U6 MED25-214ENST00000622402 642 ntTSL 5 BASIC19.29■□□□□ 0.68
TRBV9A0A0B4J1U6 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
TRBV9A0A0B4J1U6 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRBV9A0A0B4J1U6 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRBV9A0A0B4J1U6 AC142472.1-201ENST00000612013 1741 ntBASIC19.28■□□□□ 0.68
TRBV9A0A0B4J1U6 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
TRBV9A0A0B4J1U6 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.28■□□□□ 0.68
TRBV9A0A0B4J1U6 AC126177.7-201ENST00000547904 679 ntBASIC19.28■□□□□ 0.68
TRBV9A0A0B4J1U6 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.28■□□□□ 0.68
TRBV9A0A0B4J1U6 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.28■□□□□ 0.68
TRBV9A0A0B4J1U6 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC19.28■□□□□ 0.68
TRBV9A0A0B4J1U6 AP004609.3-201ENST00000610705 1884 ntBASIC19.28■□□□□ 0.68
TRBV9A0A0B4J1U6 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRBV9A0A0B4J1U6 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRBV9A0A0B4J1U6 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRBV9A0A0B4J1U6 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRBV9A0A0B4J1U6 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
TRBV9A0A0B4J1U6 MIR4449-201ENST00000578365 66 ntBASIC19.27■□□□□ 0.68
TRBV9A0A0B4J1U6 MBP-237ENST00000579129 1052 ntTSL 5 BASIC19.27■□□□□ 0.68
TRBV9A0A0B4J1U6 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRBV9A0A0B4J1U6 AC020928.2-201ENST00000588717 2197 ntBASIC19.27■□□□□ 0.68
TRBV9A0A0B4J1U6 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRBV9A0A0B4J1U6 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
TRBV9A0A0B4J1U6 AC091060.1-201ENST00000623524 1766 ntBASIC19.27■□□□□ 0.67
TRBV9A0A0B4J1U6 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
TRBV9A0A0B4J1U6 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC19.26■□□□□ 0.67
TRBV9A0A0B4J1U6 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.26■□□□□ 0.67
TRBV9A0A0B4J1U6 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC19.26■□□□□ 0.67
TRBV9A0A0B4J1U6 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRBV9A0A0B4J1U6 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRBV9A0A0B4J1U6 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRBV9A0A0B4J1U6 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.25■□□□□ 0.67
TRBV9A0A0B4J1U6 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TRBV9A0A0B4J1U6 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRBV9A0A0B4J1U6 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRBV9A0A0B4J1U6 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRBV9A0A0B4J1U6 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRBV9A0A0B4J1U6 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRBV9A0A0B4J1U6 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.24■□□□□ 0.67
TRBV9A0A0B4J1U6 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.24■□□□□ 0.67
TRBV9A0A0B4J1U6 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRBV9A0A0B4J1U6 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.23■□□□□ 0.67
TRBV9A0A0B4J1U6 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRBV9A0A0B4J1U6 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TRBV9A0A0B4J1U6 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRBV9A0A0B4J1U6 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.23■□□□□ 0.67
TRBV9A0A0B4J1U6 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.23■□□□□ 0.67
TRBV9A0A0B4J1U6 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRBV9A0A0B4J1U6 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRBV9A0A0B4J1U6 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRBV9A0A0B4J1U6 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRBV9A0A0B4J1U6 SRP68-213ENST00000629930 165 ntTSL 5 BASIC19.22■□□□□ 0.67
TRBV9A0A0B4J1U6 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRBV9A0A0B4J1U6 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
TRBV9A0A0B4J1U6 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
TRBV9A0A0B4J1U6 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRBV9A0A0B4J1U6 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV9A0A0B4J1U6 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.21■□□□□ 0.67
TRBV9A0A0B4J1U6 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV9A0A0B4J1U6 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV9A0A0B4J1U6 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV9A0A0B4J1U6 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
TRBV9A0A0B4J1U6 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV9A0A0B4J1U6 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV9A0A0B4J1U6 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV9A0A0B4J1U6 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.2■□□□□ 0.66
TRBV9A0A0B4J1U6 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV9A0A0B4J1U6 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV9A0A0B4J1U6 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV9A0A0B4J1U6 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV9A0A0B4J1U6 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV9A0A0B4J1U6 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19.2■□□□□ 0.66
TRBV9A0A0B4J1U6 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
TRBV9A0A0B4J1U6 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRBV9A0A0B4J1U6 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRBV9A0A0B4J1U6 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.19■□□□□ 0.66
TRBV9A0A0B4J1U6 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRBV9A0A0B4J1U6 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC19.19■□□□□ 0.66
TRBV9A0A0B4J1U6 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.18■□□□□ 0.66
TRBV9A0A0B4J1U6 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRBV9A0A0B4J1U6 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.18■□□□□ 0.66
TRBV9A0A0B4J1U6 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TRBV9A0A0B4J1U6 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms