Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
FOXA1P55317 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC24.15■■□□□ 1.46
FOXA1P55317 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
FOXA1P55317 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.14■■□□□ 1.45
FOXA1P55317 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.45
FOXA1P55317 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
FOXA1P55317 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.14■■□□□ 1.45
FOXA1P55317 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
FOXA1P55317 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC24.12■■□□□ 1.45
FOXA1P55317 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC24.12■■□□□ 1.45
FOXA1P55317 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
FOXA1P55317 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
FOXA1P55317 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC24.12■■□□□ 1.45
FOXA1P55317 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC24.12■■□□□ 1.45
FOXA1P55317 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
FOXA1P55317 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC24.12■■□□□ 1.45
FOXA1P55317 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
FOXA1P55317 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
FOXA1P55317 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
FOXA1P55317 AP004609.3-201ENST00000610705 1884 ntBASIC24.11■■□□□ 1.45
FOXA1P55317 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
FOXA1P55317 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
FOXA1P55317 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24.11■■□□□ 1.45
FOXA1P55317 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
FOXA1P55317 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
FOXA1P55317 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.1■■□□□ 1.45
FOXA1P55317 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
FOXA1P55317 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
FOXA1P55317 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
FOXA1P55317 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC24.09■■□□□ 1.45
FOXA1P55317 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
FOXA1P55317 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
FOXA1P55317 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
FOXA1P55317 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC24.08■■□□□ 1.45
FOXA1P55317 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC24.08■■□□□ 1.45
FOXA1P55317 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
FOXA1P55317 DUX4L29-201ENST00000425409 679 ntBASIC24.07■■□□□ 1.44
FOXA1P55317 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
FOXA1P55317 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
FOXA1P55317 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
FOXA1P55317 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC24.06■■□□□ 1.44
FOXA1P55317 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
FOXA1P55317 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
FOXA1P55317 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
FOXA1P55317 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
FOXA1P55317 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC24.05■■□□□ 1.44
FOXA1P55317 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC24.05■■□□□ 1.44
FOXA1P55317 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC24.05■■□□□ 1.44
FOXA1P55317 AC135731.1-201ENST00000569415 2548 ntBASIC24.05■■□□□ 1.44
FOXA1P55317 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC24.04■■□□□ 1.44
FOXA1P55317 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
FOXA1P55317 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
FOXA1P55317 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
FOXA1P55317 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC24.04■■□□□ 1.44
FOXA1P55317 AC145676.1-201ENST00000514988 2004 ntBASIC24.04■■□□□ 1.44
FOXA1P55317 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
FOXA1P55317 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC24.03■■□□□ 1.44
FOXA1P55317 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
FOXA1P55317 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC24.02■■□□□ 1.44
FOXA1P55317 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
FOXA1P55317 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC24.01■■□□□ 1.43
FOXA1P55317 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
FOXA1P55317 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
FOXA1P55317 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC24■■□□□ 1.43
FOXA1P55317 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC24■■□□□ 1.43
FOXA1P55317 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
FOXA1P55317 WHAMMP3-201ENST00000611636 1609 ntBASIC23.99■■□□□ 1.43
FOXA1P55317 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
FOXA1P55317 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
FOXA1P55317 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
FOXA1P55317 AC092803.2-201ENST00000564287 1899 ntBASIC23.98■■□□□ 1.43
FOXA1P55317 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.98■■□□□ 1.43
FOXA1P55317 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
FOXA1P55317 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
FOXA1P55317 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
FOXA1P55317 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.98■■□□□ 1.43
FOXA1P55317 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.97■■□□□ 1.43
FOXA1P55317 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
FOXA1P55317 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
FOXA1P55317 AC142472.1-201ENST00000612013 1741 ntBASIC23.97■■□□□ 1.43
FOXA1P55317 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
FOXA1P55317 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
FOXA1P55317 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
FOXA1P55317 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
FOXA1P55317 RPS2P35-201ENST00000443417 897 ntBASIC23.96■■□□□ 1.43
FOXA1P55317 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.96■■□□□ 1.43
FOXA1P55317 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
FOXA1P55317 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
FOXA1P55317 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.95■■□□□ 1.43
FOXA1P55317 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
FOXA1P55317 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.95■■□□□ 1.42
FOXA1P55317 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
FOXA1P55317 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
FOXA1P55317 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
FOXA1P55317 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.94■■□□□ 1.42
FOXA1P55317 DUSP8P4-201ENST00000399538 1761 ntBASIC23.93■■□□□ 1.42
FOXA1P55317 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
FOXA1P55317 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
FOXA1P55317 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
FOXA1P55317 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms