Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SHKBP1Q8TBC3 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
SHKBP1Q8TBC3 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
SHKBP1Q8TBC3 NTF6A-201ENST00000591175 560 ntBASIC26.56■■□□□ 1.84
SHKBP1Q8TBC3 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.56■■□□□ 1.84
SHKBP1Q8TBC3 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC26.55■■□□□ 1.84
SHKBP1Q8TBC3 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
SHKBP1Q8TBC3 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SHKBP1Q8TBC3 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SHKBP1Q8TBC3 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SHKBP1Q8TBC3 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
SHKBP1Q8TBC3 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC26.54■■□□□ 1.84
SHKBP1Q8TBC3 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
SHKBP1Q8TBC3 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC26.54■■□□□ 1.84
SHKBP1Q8TBC3 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SHKBP1Q8TBC3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SHKBP1Q8TBC3 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
SHKBP1Q8TBC3 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC26.53■■□□□ 1.84
SHKBP1Q8TBC3 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC26.53■■□□□ 1.84
SHKBP1Q8TBC3 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
SHKBP1Q8TBC3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
SHKBP1Q8TBC3 AP004833.2-201ENST00000532228 1454 ntBASIC26.52■■□□□ 1.84
SHKBP1Q8TBC3 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.83
SHKBP1Q8TBC3 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SHKBP1Q8TBC3 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.83
SHKBP1Q8TBC3 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC26.5■■□□□ 1.83
SHKBP1Q8TBC3 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
SHKBP1Q8TBC3 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
SHKBP1Q8TBC3 AC092296.2-201ENST00000589470 999 ntBASIC26.49■■□□□ 1.83
SHKBP1Q8TBC3 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SHKBP1Q8TBC3 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SHKBP1Q8TBC3 MED25-210ENST00000612854 801 ntTSL 5 BASIC26.48■■□□□ 1.83
SHKBP1Q8TBC3 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SHKBP1Q8TBC3 MED25-214ENST00000622402 642 ntTSL 5 BASIC26.48■■□□□ 1.83
SHKBP1Q8TBC3 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC26.47■■□□□ 1.83
SHKBP1Q8TBC3 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SHKBP1Q8TBC3 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
SHKBP1Q8TBC3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SHKBP1Q8TBC3 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC26.46■■□□□ 1.83
SHKBP1Q8TBC3 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
SHKBP1Q8TBC3 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
SHKBP1Q8TBC3 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
SHKBP1Q8TBC3 AC100797.4-201ENST00000631653 1827 ntBASIC26.45■■□□□ 1.82
SHKBP1Q8TBC3 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
SHKBP1Q8TBC3 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.45■■□□□ 1.82
SHKBP1Q8TBC3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
SHKBP1Q8TBC3 U85056.1-201ENST00000616429 682 ntBASIC26.44■■□□□ 1.82
SHKBP1Q8TBC3 AC012354.3-201ENST00000623734 483 ntBASIC26.44■■□□□ 1.82
SHKBP1Q8TBC3 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.43■■□□□ 1.82
SHKBP1Q8TBC3 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SHKBP1Q8TBC3 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
SHKBP1Q8TBC3 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC26.43■■□□□ 1.82
SHKBP1Q8TBC3 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
SHKBP1Q8TBC3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SHKBP1Q8TBC3 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC26.42■■□□□ 1.82
SHKBP1Q8TBC3 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC26.42■■□□□ 1.82
SHKBP1Q8TBC3 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
SHKBP1Q8TBC3 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
SHKBP1Q8TBC3 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
SHKBP1Q8TBC3 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
SHKBP1Q8TBC3 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.4■■□□□ 1.82
SHKBP1Q8TBC3 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SHKBP1Q8TBC3 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
SHKBP1Q8TBC3 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC26.39■■□□□ 1.82
SHKBP1Q8TBC3 ECEL1P2-201ENST00000461596 1295 ntBASIC26.39■■□□□ 1.82
SHKBP1Q8TBC3 AC126177.7-201ENST00000547904 679 ntBASIC26.39■■□□□ 1.82
SHKBP1Q8TBC3 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
SHKBP1Q8TBC3 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
SHKBP1Q8TBC3 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC26.38■■□□□ 1.81
SHKBP1Q8TBC3 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
SHKBP1Q8TBC3 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC26.38■■□□□ 1.81
SHKBP1Q8TBC3 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
SHKBP1Q8TBC3 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC26.37■■□□□ 1.81
SHKBP1Q8TBC3 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
SHKBP1Q8TBC3 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SHKBP1Q8TBC3 MOB2-207ENST00000614710 705 ntTSL 5 BASIC26.36■■□□□ 1.81
SHKBP1Q8TBC3 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
SHKBP1Q8TBC3 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC26.36■■□□□ 1.81
SHKBP1Q8TBC3 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SHKBP1Q8TBC3 AL157400.5-201ENST00000507624 621 ntBASIC26.35■■□□□ 1.81
SHKBP1Q8TBC3 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
SHKBP1Q8TBC3 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC26.35■■□□□ 1.81
SHKBP1Q8TBC3 AC018358.1-201ENST00000631079 1402 ntBASIC26.35■■□□□ 1.81
SHKBP1Q8TBC3 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC26.34■■□□□ 1.81
SHKBP1Q8TBC3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SHKBP1Q8TBC3 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC26.34■■□□□ 1.81
SHKBP1Q8TBC3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
SHKBP1Q8TBC3 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SHKBP1Q8TBC3 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
SHKBP1Q8TBC3 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC26.33■■□□□ 1.8
SHKBP1Q8TBC3 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
SHKBP1Q8TBC3 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.32■■□□□ 1.8
SHKBP1Q8TBC3 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.31■■□□□ 1.8
SHKBP1Q8TBC3 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SHKBP1Q8TBC3 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
SHKBP1Q8TBC3 AL033527.3-201ENST00000566366 1196 ntBASIC26.31■■□□□ 1.8
SHKBP1Q8TBC3 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SHKBP1Q8TBC3 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
SHKBP1Q8TBC3 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SHKBP1Q8TBC3 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms