RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeastyeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC40YDR364C TY1A-ORP0CX59 440 aa7.03□□□□□ -1.28
CDC40YDR364C TY1A-PR2P0CX60 440 aa7.03□□□□□ -1.28
CDC40YDR364C TY1A-DR5P0CX65 440 aa7.03□□□□□ -1.28
CDC40YDR364C TY1A-ER2P0CX66 440 aa7.03□□□□□ -1.28
CDC40YDR364C TY1A-GR3P0CX67 440 aa7.03□□□□□ -1.28
CDC40YDR364C TY1A-LR1P0CX68 440 aa7.03□□□□□ -1.28
CDC40YDR364C TY1A-MR2P0CX69 440 aa7.03□□□□□ -1.28
CDC40YDR364C GCD11P32481 527 aaKnown RBP7.03□□□□□ -1.28
CDC40YDR364C TY1A-JR2P47099 440 aa7.03□□□□□ -1.28
CDC40YDR364C TY1A-DR1Q03856 440 aa7.03□□□□□ -1.28
CDC40YDR364C TY1A-ML1Q04706 440 aaKnown RBP7.03□□□□□ -1.28
CDC40YDR364C TY1A-BRQ12217 440 aa7.03□□□□□ -1.28
CDC40YDR364C TY1A-NL2Q12470 440 aa7.03□□□□□ -1.28
CDC40YDR364C TY1A-GR2Q12485 440 aa7.03□□□□□ -1.28
CDC40YDR364C SPT16P32558 1035 aaKnown RBP7.02□□□□□ -1.29
CDC40YDR364C COX6P00427 148 aa7.01□□□□□ -1.29
CDC40YDR364C MVP1P40959 511 aaKnown RBP7.01□□□□□ -1.29
CDC40YDR364C MAK21Q12176 1025 aaKnown RBP7.01□□□□□ -1.29
CDC40YDR364C YDR444WQ04093 687 aa7□□□□□ -1.29
CDC40YDR364C YPR109WQ06104 294 aa6.95□□□□□ -1.3
CDC40YDR364C RGR1P19263 1082 aa6.95□□□□□ -1.3
CDC40YDR364C FRK1Q03002 865 aaPredicted RBP6.95□□□□□ -1.3
CDC40YDR364C PAT1P25644 796 aaKnown RBP6.94□□□□□ -1.3
CDC40YDR364C LCB5Q06147 687 aaKnown RBP6.94□□□□□ -1.3
CDC40YDR364C BDP1P46678 594 aa6.93□□□□□ -1.3
CDC40YDR364C VPS70P47161 811 aa6.93□□□□□ -1.3
CDC40YDR364C RRN7P40992 514 aa6.92□□□□□ -1.3
CDC40YDR364C HED1Q03937 162 aa6.92□□□□□ -1.3
CDC40YDR364C MTC5Q03897 1148 aa6.89□□□□□ -1.31
CDC40YDR364C MET32Q12041 191 aa6.85□□□□□ -1.31
CDC40YDR364C KEX2P13134 814 aa6.84□□□□□ -1.31
CDC40YDR364C ERF2Q06551 359 aa6.84□□□□□ -1.31
CDC40YDR364C MOD5P07884 428 aa6.82□□□□□ -1.32
CDC40YDR364C ASH1P34233 588 aa6.82□□□□□ -1.32
CDC40YDR364C RRD1P40454 393 aaKnown RBP6.81□□□□□ -1.32
CDC40YDR364C PSE1P32337 1089 aaKnown RBP6.8□□□□□ -1.32
CDC40YDR364C PAC1P39946 494 aaKnown RBP6.8□□□□□ -1.32
CDC40YDR364C AFT1P22149 690 aa6.79□□□□□ -1.32
CDC40YDR364C AGE1Q04412 482 aa6.78□□□□□ -1.32
CDC40YDR364C CLB5P30283 435 aa6.76□□□□□ -1.33
CDC40YDR364C CKB1P43639 278 aa6.76□□□□□ -1.33
CDC40YDR364C PBS2P08018 668 aa6.75□□□□□ -1.33
CDC40YDR364C RTF1P53064 558 aa6.75□□□□□ -1.33
CDC40YDR364C TUB4P53378 473 aa6.75□□□□□ -1.33
CDC40YDR364C HST3P53687 447 aa6.75□□□□□ -1.33
CDC40YDR364C ACO2P39533 789 aa6.72□□□□□ -1.33
CDC40YDR364C PUS5Q06244 254 aa6.72□□□□□ -1.33
CDC40YDR364C YNL115CP53925 644 aa6.71□□□□□ -1.33
CDC40YDR364C RQC2Q12532 1038 aaKnown RBP6.71□□□□□ -1.33
CDC40YDR364C YJR115WP47152 169 aa6.7□□□□□ -1.34
CDC40YDR364C SIT4P20604 311 aa6.69□□□□□ -1.34
CDC40YDR364C TPD3P31383 635 aa6.69□□□□□ -1.34
CDC40YDR364C CAF120P53836 1060 aa6.69□□□□□ -1.34
CDC40YDR364C TRK2P28584 889 aa6.67□□□□□ -1.34
CDC40YDR364C KXD1P53158 218 aa6.66□□□□□ -1.34
CDC40YDR364C MAM3Q12296 706 aa6.66□□□□□ -1.34
CDC40YDR364C HXT10P43581 546 aa6.63□□□□□ -1.35
CDC40YDR364C TEA1P47988 759 aa6.63□□□□□ -1.35
CDC40YDR364C MSB3P48566 633 aaPredicted RBP6.63□□□□□ -1.35
CDC40YDR364C DSF2P38213 736 aa6.61□□□□□ -1.35
CDC40YDR364C SYH1Q02875 849 aaKnown RBP6.61□□□□□ -1.35
CDC40YDR364C NIS1P53939 407 aa6.59□□□□□ -1.35
CDC40YDR364C PDC1P06169 563 aaKnown RBP6.58□□□□□ -1.36
CDC40YDR364C IES2P40154 320 aa6.58□□□□□ -1.36
CDC40YDR364C NUP42P49686 430 aaKnown RBP6.58□□□□□ -1.36
CDC40YDR364C YGR035CP53222 116 aa6.57□□□□□ -1.36
CDC40YDR364C HPF1Q05164 967 aa6.56□□□□□ -1.36
CDC40YDR364C OPT2Q06593 877 aa6.56□□□□□ -1.36
CDC40YDR364C UGA3P26370 528 aa6.55□□□□□ -1.36
CDC40YDR364C PTK2P47116 818 aaKnown RBP6.54□□□□□ -1.36
CDC40YDR364C YLR346CQ06139 101 aa6.54□□□□□ -1.36
CDC40YDR364C SLY41P22215 453 aa6.53□□□□□ -1.36
CDC40YDR364C YIR007WP40566 764 aa6.53□□□□□ -1.36
CDC40YDR364C RPA14P50106 137 aa6.53□□□□□ -1.36
CDC40YDR364C FPK1P53739 893 aa6.53□□□□□ -1.36
CDC40YDR364C YPR097WQ06839 1073 aa6.53□□□□□ -1.36
CDC40YDR364C MRT4P33201 236 aaKnown RBP6.52□□□□□ -1.37
CDC40YDR364C RTT106P40161 455 aa6.52□□□□□ -1.37
CDC40YDR364C PUS6P53294 404 aa6.52□□□□□ -1.37
CDC40YDR364C SAS10Q12136 610 aaPredicted RBP6.52□□□□□ -1.37
CDC40YDR364C ALR1Q08269 859 aa6.51□□□□□ -1.37
CDC40YDR364C DIT2P21595 489 aa6.5□□□□□ -1.37
CDC40YDR364C KIP2P28743 706 aa6.5□□□□□ -1.37
CDC40YDR364C GLY1P37303 387 aaKnown RBP6.5□□□□□ -1.37
CDC40YDR364C NUP85P46673 744 aa6.5□□□□□ -1.37
CDC40YDR364C SRF1Q12516 437 aa6.5□□□□□ -1.37
CDC40YDR364C BUB1P41695 1021 aaKnown RBP RIP-Chip data6.48□□□□□ -1.37not detected
CDC40YDR364C IXR1P33417 597 aa6.47□□□□□ -1.37
CDC40YDR364C LSB3P43603 459 aaKnown RBP6.47□□□□□ -1.37
CDC40YDR364C YMR196WQ04336 1088 aa6.47□□□□□ -1.37
CDC40YDR364C ICP55P40051 511 aa6.46□□□□□ -1.37
CDC40YDR364C YDL206WQ12424 762 aa6.46□□□□□ -1.37
CDC40YDR364C TBF1Q02457 562 aa6.45□□□□□ -1.38
CDC40YDR364C HST2P53686 357 aa6.44□□□□□ -1.38
CDC40YDR364C SCW11P53189 542 aa6.44□□□□□ -1.38
CDC40YDR364C TYW1Q08960 810 aaKnown RBP6.44□□□□□ -1.38
CDC40YDR364C TRM1P15565 570 aaKnown RBP6.43□□□□□ -1.38
CDC40YDR364C MIP1P15801 1254 aa6.43□□□□□ -1.38
CDC40YDR364C SPB4P25808 606 aaPredicted RBP6.43□□□□□ -1.38
CDC40YDR364C TY1A-BLQ12266 440 aa6.43□□□□□ -1.38
Retrieved 100 of 5,963 RNA–protein pairs in 16.1 ms