RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeastyeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC40YDR364C FAP1P53971 965 aa14.61□□□□□ -0.07
CDC40YDR364C MTC1P47018 478 aaKnown RBP14.47□□□□□ -0.09
CDC40YDR364C PRY3P47033 881 aa13.85□□□□□ -0.19
CDC40YDR364C YCK3P39962 524 aa13.33□□□□□ -0.27
CDC40YDR364C AAD16Q02895 342 aa13.15□□□□□ -0.3
CDC40YDR364C PRI1P10363 409 aa13.09□□□□□ -0.31
CDC40YDR364C HAA1Q12753 694 aaKnown RBP12.92□□□□□ -0.34
CDC40YDR364C DRS1P32892 752 aaKnown RBP12.33□□□□□ -0.44
CDC40YDR364C TSR3Q12094 313 aaKnown RBP12.27□□□□□ -0.45
CDC40YDR364C ISW2Q08773 1120 aa12.22□□□□□ -0.45
CDC40YDR364C RPG1P38249 964 aaKnown RBP12.21□□□□□ -0.45
CDC40YDR364C MRPL32P25348 183 aa11.7□□□□□ -0.54
CDC40YDR364C YGL015CP33199 130 aa11.67□□□□□ -0.54
CDC40YDR364C BUD31P25337 157 aaPredicted RBP11.45□□□□□ -0.58
CDC40YDR364C DIP2Q12220 943 aaPredicted RBP11.05□□□□□ -0.64
CDC40YDR364C RSE1Q04693 1361 aaKnown RBP11.05□□□□□ -0.64
CDC40YDR364C CDC27P38042 758 aa11.01□□□□□ -0.65
CDC40YDR364C RPL17AP05740 184 aaKnown RBP10.83□□□□□ -0.68
CDC40YDR364C REB1P21538 810 aa10.83□□□□□ -0.68
CDC40YDR364C RPL17BP46990 184 aaKnown RBP10.83□□□□□ -0.68
CDC40YDR364C UBP10P53874 792 aaPredicted RBP10.79□□□□□ -0.68
CDC40YDR364C MAP2P38174 421 aaKnown RBP10.78□□□□□ -0.68
CDC40YDR364C SIS1P25294 352 aaKnown RBP10.64□□□□□ -0.71
CDC40YDR364C YKR023WP36119 530 aaKnown RBP10.61□□□□□ -0.71
CDC40YDR364C AVT3P36062 692 aa10.52□□□□□ -0.73
CDC40YDR364C SPT21P35209 758 aa10.39□□□□□ -0.75
CDC40YDR364C UBP9P39967 754 aa10.38□□□□□ -0.75
CDC40YDR364C TFC8Q12308 588 aa10.35□□□□□ -0.75
CDC40YDR364C DCD1P06773 312 aa10.34□□□□□ -0.75
CDC40YDR364C TGL3P40308 642 aa10.34□□□□□ -0.75
CDC40YDR364C HOP09932 586 aa10.32□□□□□ -0.76
CDC40YDR364C TIF4632P39936 914 aaKnown RBP10.26□□□□□ -0.77
CDC40YDR364C SCY1P53009 804 aa10.25□□□□□ -0.77
CDC40YDR364C SLX5P32828 619 aaKnown RBP10.17□□□□□ -0.78
CDC40YDR364C BFR2Q06631 534 aaKnown RBP9.98□□□□□ -0.81
CDC40YDR364C BCH2P36122 765 aa9.95□□□□□ -0.82
CDC40YDR364C MST1P07236 462 aa9.82□□□□□ -0.84
CDC40YDR364C YBL029C-AQ3E756 94 aa9.82□□□□□ -0.84
CDC40YDR364C VNX1P42839 908 aa9.67□□□□□ -0.86
CDC40YDR364C RIM101P33400 625 aa9.64□□□□□ -0.87
CDC40YDR364C AIR2Q12476 344 aaKnown RBP9.59□□□□□ -0.87
CDC40YDR364C BDF1P35817 686 aa9.58□□□□□ -0.88
CDC40YDR364C YOR238WQ08634 303 aa9.57□□□□□ -0.88
CDC40YDR364C EPS1P40557 701 aa9.56□□□□□ -0.88
CDC40YDR364C FKH1P40466 484 aa9.5□□□□□ -0.89
CDC40YDR364C SPP1Q03012 353 aa9.5□□□□□ -0.89
CDC40YDR364C NSR1P27476 414 aaKnown RBP RIP-Chip data9.48□□□□□ -0.89not detected
CDC40YDR364C WSC3Q12215 556 aa9.38□□□□□ -0.91
CDC40YDR364C YJL171CP46992 396 aa9.37□□□□□ -0.91
CDC40YDR364C TIF11P38912 153 aaKnown RBP9.34□□□□□ -0.91
CDC40YDR364C OXP1P28273 1286 aa9.3□□□□□ -0.92
CDC40YDR364C YAP5P40574 245 aa9.29□□□□□ -0.92
CDC40YDR364C IOC2Q12072 812 aa9.21□□□□□ -0.94
CDC40YDR364C LDB19Q12502 818 aa9.21□□□□□ -0.94
CDC40YDR364C BMT6Q12291 365 aa9.19□□□□□ -0.94
CDC40YDR364C ULI1P43604 169 aa9.11□□□□□ -0.95
CDC40YDR364C YIL055CP40523 627 aaKnown RBP9.1□□□□□ -0.95
CDC40YDR364C PTP3P40048 928 aa9.08□□□□□ -0.96
CDC40YDR364C GTT3P39996 337 aa9.05□□□□□ -0.96
CDC40YDR364C BBC1P47068 1157 aa8.99□□□□□ -0.97
CDC40YDR364C AI2P03876 854 aa8.99□□□□□ -0.97
CDC40YDR364C RSM7P47150 247 aa8.99□□□□□ -0.97
CDC40YDR364C PIB1Q06651 286 aa8.9□□□□□ -0.98
CDC40YDR364C RTG1P32607 177 aa8.89□□□□□ -0.99
CDC40YDR364C MSB4Q12317 492 aa8.87□□□□□ -0.99
CDC40YDR364C NCR1Q12200 1170 aa8.86□□□□□ -0.99
CDC40YDR364C YAH1Q12184 172 aaKnown RBP8.83□□□□□ -1
CDC40YDR364C TRP5P00931 707 aaKnown RBP8.82□□□□□ -1
CDC40YDR364C EAP1P36041 632 aaKnown RBP8.82□□□□□ -1
CDC40YDR364C YOL036WQ08206 761 aa8.77□□□□□ -1.01
CDC40YDR364C SEC61P32915 480 aa8.76□□□□□ -1.01
CDC40YDR364C SET4P42948 560 aa8.74□□□□□ -1.01
CDC40YDR364C YNL035CP53962 389 aaKnown RBP8.74□□□□□ -1.01
CDC40YDR364C BCK2P33306 851 aa8.73□□□□□ -1.01
CDC40YDR364C RGA2Q06407 1009 aa8.73□□□□□ -1.01
CDC40YDR364C YLR271WQ06152 274 aa8.72□□□□□ -1.01
CDC40YDR364C TFA1P36100 482 aa8.69□□□□□ -1.02
CDC40YDR364C PSD2P53037 1138 aaKnown RBP8.67□□□□□ -1.02
CDC40YDR364C DAN4P47179 1161 aa8.61□□□□□ -1.03
CDC40YDR364C SAP30P38429 201 aa8.61□□□□□ -1.03
CDC40YDR364C CHL1P22516 861 aaPredicted RBP8.6□□□□□ -1.03
CDC40YDR364C MRM1P25270 412 aa8.57□□□□□ -1.04
CDC40YDR364C SAM3Q08986 587 aa8.56□□□□□ -1.04
CDC40YDR364C PRE3P38624 215 aa8.53□□□□□ -1.04
CDC40YDR364C VMA1P17255 1071 aaKnown RBP8.52□□□□□ -1.05
CDC40YDR364C YDL129WQ07555 291 aa8.51□□□□□ -1.05
CDC40YDR364C VPS29P38759 282 aa8.5□□□□□ -1.05
CDC40YDR364C DBP1P24784 617 aaKnown RBP8.49□□□□□ -1.05
CDC40YDR364C TFG1P41895 735 aaPredicted RBP8.49□□□□□ -1.05
CDC40YDR364C SSP1P38871 571 aa8.48□□□□□ -1.05
CDC40YDR364C XDJ1P39102 459 aa8.47□□□□□ -1.05
CDC40YDR364C YMR1P47147 688 aaKnown RBP RIP-Chip data8.47□□□□□ -1.05not detected
CDC40YDR364C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.47□□□□□ -1.05not detected
CDC40YDR364C YFR006WP43590 535 aa8.46□□□□□ -1.06
CDC40YDR364C JIP4Q03361 876 aa8.46□□□□□ -1.06
CDC40YDR364C STS1P38637 319 aa8.45□□□□□ -1.06
CDC40YDR364C YDR344CQ05510 147 aa8.44□□□□□ -1.06
CDC40YDR364C VRP1P37370 817 aa8.39□□□□□ -1.07
CDC40YDR364C RTG3P38165 486 aa8.38□□□□□ -1.07
CDC40YDR364C RGA1P39083 1007 aa8.37□□□□□ -1.07
Retrieved 100 of 5,963 RNA–protein pairs in 66.4 ms