Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 ATP5B-203ENST00000547808 705 ntTSL 525.44■■□□□ 1.669e-22■□□□□ 8.6
U2AF1Q01081 ATP5B-207ENST00000551020 856 ntTSL 325.29■■□□□ 1.649e-22■□□□□ 8.6
U2AF1Q01081 TMEM135-204ENST00000526733 496 ntTSL 224.15■■□□□ 1.461e-7■□□□□ 8.6
U2AF1Q01081 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC23.74■■□□□ 1.391e-7■□□□□ 8.6
U2AF1Q01081 NKTR-203ENST00000442970 646 ntTSL 2 BASIC23.43■■□□□ 1.344e-10■□□□□ 8.6
U2AF1Q01081 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.314e-23■□□□□ 8.6
U2AF1Q01081 NEU1-207ENST00000480384 2214 ntTSL 223.14■■□□□ 1.294e-23■□□□□ 8.6
U2AF1Q01081 NKTR-214ENST00000478488 698 ntTSL 323.07■■□□□ 1.284e-10■□□□□ 8.6
U2AF1Q01081 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC22.76■■□□□ 1.238e-7■□□□□ 8.6
U2AF1Q01081 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC21.99■■□□□ 1.118e-7■□□□□ 8.6
U2AF1Q01081 EDC4-202ENST00000536072 2375 ntTSL 221.71■■□□□ 1.072e-11■□□□□ 8.6
U2AF1Q01081 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.029e-22■□□□□ 8.6
U2AF1Q01081 RNF5-204ENST00000487940 357 ntTSL 221.25■□□□□ 0.998e-7■□□□□ 8.6
U2AF1Q01081 NKTR-215ENST00000487466 2335 ntTSL 221.16■□□□□ 0.984e-10■□□□□ 8.6
U2AF1Q01081 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.887e-9■□□□□ 8.6
U2AF1Q01081 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC19.93■□□□□ 0.788e-7■□□□□ 8.6
U2AF1Q01081 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC19.81■□□□□ 0.761e-7■□□□□ 8.6
U2AF1Q01081 EDC4-208ENST00000574770 1425 ntTSL 519.37■□□□□ 0.692e-11■□□□□ 8.6
U2AF1Q01081 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC18.93■□□□□ 0.628e-7■□□□□ 8.6
U2AF1Q01081 SLC25A3-209ENST00000548046 550 ntTSL 418.89■□□□□ 0.617e-9■□□□□ 8.6
U2AF1Q01081 CHEK1-210ENST00000528276 1814 ntTSL 218.74■□□□□ 0.598e-7■□□□□ 8.6
U2AF1Q01081 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.572e-24■□□□□ 8.6
U2AF1Q01081 PRAME-209ENST00000439106 891 ntAPPRIS ALT2 TSL 318.56■□□□□ 0.562e-24■□□□□ 8.6
U2AF1Q01081 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.561e-7■□□□□ 8.6
U2AF1Q01081 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC18.39■□□□□ 0.537e-9■□□□□ 8.6
U2AF1Q01081 SLC25A3-213ENST00000550695 756 ntTSL 318.34■□□□□ 0.537e-9■□□□□ 8.6
U2AF1Q01081 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.482e-24■□□□□ 8.6
U2AF1Q01081 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.472e-24■□□□□ 8.6
U2AF1Q01081 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC17.91■□□□□ 0.467e-9■□□□□ 8.6
U2AF1Q01081 RBM15-204ENST00000617047 3284 ntTSL 1 (best) BASIC17.83■□□□□ 0.448e-7■□□□□ 8.6
U2AF1Q01081 PRAME-211ENST00000476336 589 ntTSL 217.81■□□□□ 0.442e-24■□□□□ 8.6
U2AF1Q01081 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.427e-9■□□□□ 8.6
U2AF1Q01081 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC17.36■□□□□ 0.374e-10■□□□□ 8.6
U2AF1Q01081 TFG-202ENST00000418917 1716 ntAPPRIS ALT1 TSL 3 BASIC17.33■□□□□ 0.364e-10■□□□□ 8.6
U2AF1Q01081 RBM15-201ENST00000369784 4244 ntTSL 1 (best) BASIC17.31■□□□□ 0.368e-7■□□□□ 8.6
U2AF1Q01081 KLHL24-211ENST00000476808 2126 ntTSL 2 BASIC17.29■□□□□ 0.368e-7■□□□□ 8.6
U2AF1Q01081 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.352e-24■□□□□ 8.6
U2AF1Q01081 PRAME-207ENST00000420709 705 ntAPPRIS ALT2 TSL 217.2■□□□□ 0.342e-24■□□□□ 8.6
U2AF1Q01081 CHEK1-203ENST00000428830 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.348e-7■□□□□ 8.6
U2AF1Q01081 NEU1-209ENST00000495807 4616 ntTSL 216.84■□□□□ 0.294e-23■□□□□ 8.6
U2AF1Q01081 PRAME-201ENST00000398741 2202 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.282e-24■□□□□ 8.6
U2AF1Q01081 PRAME-203ENST00000402697 2057 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.282e-24■□□□□ 8.6
U2AF1Q01081 PRAME-213ENST00000492657 2831 ntTSL 1 (best)16.74■□□□□ 0.272e-24■□□□□ 8.6
U2AF1Q01081 SLC25A3-212ENST00000549338 1285 ntAPPRIS ALT1 TSL 3 BASIC16.64■□□□□ 0.257e-9■□□□□ 8.6
U2AF1Q01081 SLC25A3-214ENST00000551123 1417 ntTSL 1 (best)16.61■□□□□ 0.257e-9■□□□□ 8.6
U2AF1Q01081 PRAME-204ENST00000403441 567 ntAPPRIS ALT2 TSL 316.46■□□□□ 0.232e-24■□□□□ 8.6
U2AF1Q01081 RBM15-205ENST00000618772 3431 ntTSL 1 (best) BASIC16.44■□□□□ 0.228e-7■□□□□ 8.6
U2AF1Q01081 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC16.1■□□□□ 0.178e-7■□□□□ 8.6
U2AF1Q01081 CHEK1-201ENST00000278916 1712 ntTSL 5 BASIC15.82■□□□□ 0.128e-7■□□□□ 8.6
U2AF1Q01081 PRAME-210ENST00000442481 581 ntTSL 315.43■□□□□ 0.062e-24■□□□□ 8.6
U2AF1Q01081 SLC25A3-203ENST00000401722 6087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.087e-9■□□□□ 8.6
U2AF1Q01081 CHEK1-218ENST00000544373 1653 ntTSL 1 (best) BASIC14.36□□□□□ -0.118e-7■□□□□ 8.6
U2AF1Q01081 EDC4-207ENST00000573992 3934 ntTSL 1 (best)14.17□□□□□ -0.142e-11■□□□□ 8.6
U2AF1Q01081 KDELR2-205ENST00000463747 376 ntTSL 514.06□□□□□ -0.161e-7■□□□□ 8.6
U2AF1Q01081 CHEK1-204ENST00000438015 4153 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.178e-7■□□□□ 8.6
U2AF1Q01081 CHEK1-213ENST00000532449 4051 ntTSL 2 BASIC13.82□□□□□ -0.28e-7■□□□□ 8.6
U2AF1Q01081 KDELR2-203ENST00000454368 2478 ntTSL 213.58□□□□□ -0.241e-7■□□□□ 8.6
U2AF1Q01081 SLC25A3-204ENST00000546766 3236 ntTSL 1 (best)13.5□□□□□ -0.257e-9■□□□□ 8.6
U2AF1Q01081 CHEK1-206ENST00000524737 1799 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.258e-7■□□□□ 8.6
U2AF1Q01081 H2AFV-203ENST00000349299 596 ntTSL 2 BASIC12.95□□□□□ -0.348e-7■□□□□ 8.6
U2AF1Q01081 ATP5B-202ENST00000547250 840 ntTSL 512.42□□□□□ -0.429e-22■□□□□ 8.6
U2AF1Q01081 TMEM135-203ENST00000525018 753 ntTSL 511.62□□□□□ -0.551e-7■□□□□ 8.6
U2AF1Q01081 RARS-205ENST00000520421 396 ntTSL 511.43□□□□□ -0.581e-7■□□□□ 8.6
U2AF1Q01081 SLC25A3-205ENST00000547444 517 ntTSL 1 (best)11.19□□□□□ -0.627e-9■□□□□ 8.6
U2AF1Q01081 TFG-204ENST00000476228 1783 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.634e-10■□□□□ 8.6
U2AF1Q01081 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC9.92□□□□□ -0.821e-7■□□□□ 8.6
U2AF1Q01081 ATP5B-208ENST00000551182 457 ntTSL 29.27□□□□□ -0.939e-22■□□□□ 8.6
U2AF1Q01081 TMEM135-202ENST00000340353 3938 ntTSL 1 (best) BASIC9.26□□□□□ -0.931e-7■□□□□ 8.6
U2AF1Q01081 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.931e-7■□□□□ 8.6
U2AF1Q01081 ATP5B-204ENST00000548474 449 ntTSL 38.42□□□□□ -1.069e-22■□□□□ 8.6
U2AF1Q01081 TMEM135-206ENST00000529023 1095 ntTSL 28.28□□□□□ -1.081e-7■□□□□ 8.6
U2AF1Q01081 SLC25A3-208ENST00000547908 893 ntTSL 27.87□□□□□ -1.157e-9■□□□□ 8.6
U2AF1Q01081 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC7.58□□□□□ -1.28e-7■□□□□ 8.6
U2AF1Q01081 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.238e-7■□□□□ 8.6
U2AF1Q01081 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC7.34□□□□□ -1.231e-7■□□□□ 8.6
U2AF1Q01081 RARS-202ENST00000518757 580 ntTSL 56□□□□□ -1.451e-7■□□□□ 8.6
U2AF1Q01081 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.451e-7■□□□□ 8.6
U2AF1Q01081 RBM39-235ENST00000490354 436 ntTSL 25.92□□□□□ -1.468e-7■□□□□ 8.6
U2AF1Q01081 ARHGEF12-208ENST00000529970 3786 ntTSL 25.24□□□□□ -1.571e-7■□□□□ 8.6
U2AF1Q01081 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC4.52□□□□□ -1.694e-10■□□□□ 8.6
U2AF1Q01081 TMEM135-208ENST00000531800 201 ntTSL 53.75□□□□□ -1.811e-7■□□□□ 8.6
U2AF1Q01081 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC37.55■■■■□ 3.65e-8■□□□□ 8.6
U2AF1Q01081 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC36.94■■■■□ 3.55e-8■□□□□ 8.6
U2AF1Q01081 SDCCAG3-203ENST00000371723 865 ntTSL 234.75■■■■□ 3.155e-8■□□□□ 8.6
U2AF1Q01081 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC33.9■■■■□ 3.025e-8■□□□□ 8.6
U2AF1Q01081 SDCCAG3-209ENST00000468963 686 ntTSL 219.81■□□□□ 0.765e-8■□□□□ 8.6
U2AF1Q01081 STX2-204ENST00000540889 427 ntTSL 27.27□□□□□ -1.255e-7■□□□□ 8.6
U2AF1Q01081 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.243e-37■□□□□ 8.6
U2AF1Q01081 APLP2-202ENST00000278756 3687 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.213e-37■□□□□ 8.6
U2AF1Q01081 WDR27-210ENST00000496752 1562 ntTSL 524.63■■□□□ 1.532e-7■□□□□ 8.5
U2AF1Q01081 SQSTM1-201ENST00000360718 2253 ntTSL 1 (best) BASIC17.3■□□□□ 0.362e-7■□□□□ 8.5
U2AF1Q01081 BCL6-205ENST00000438077 709 ntTSL 327.82■■■□□ 2.043e-6■□□□□ 8.5
U2AF1Q01081 TAOK2-206ENST00000570844 1721 ntTSL 227.49■■□□□ 1.993e-6■□□□□ 8.5
U2AF1Q01081 IER3-202ENST00000376377 1350 ntBASIC24.52■■□□□ 1.523e-6■□□□□ 8.5
U2AF1Q01081 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.153e-6■□□□□ 8.5
U2AF1Q01081 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.683e-6■□□□□ 8.5
U2AF1Q01081 SOX9-201ENST00000245479 3935 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.033e-6■□□□□ 8.5
U2AF1Q01081 ITIH3-205ENST00000465243 824 ntTSL 512.83□□□□□ -0.363e-6■□□□□ 8.5
U2AF1Q01081 ITIH3-203ENST00000463893 529 ntTSL 411.05□□□□□ -0.643e-6■□□□□ 8.5
U2AF1Q01081 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC10.44□□□□□ -0.743e-6■□□□□ 8.5
Retrieved 100 of 10,096 protein–RNA pairs in 366.2 ms