RNA–Protein interactions for RNA: ENST00000406503.1

PRAME-206, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PRAME, Length 740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-206ENST00000406503 NISCHQ9Y2I1 1504 aa32.84■■■□□ 2.85
PRAME-206ENST00000406503 CCDC180Q9P1Z9 1646 aa29.6■■■□□ 2.33
PRAME-206ENST00000406503 ABCC9O60706 1549 aa29.53■■■□□ 2.32
PRAME-206ENST00000406503 RB1CC1Q8TDY2 1594 aa28.1■■■□□ 2.09
PRAME-206ENST00000406503 NACADO15069 1562 aa27.89■■■□□ 2.05
PRAME-206ENST00000406503 DNAJC5BQ9UF47 199 aa27.77■■■□□ 2.04
PRAME-206ENST00000406503 UNC13AQ9UPW8 1703 aa27.72■■■□□ 2.03
PRAME-206ENST00000406503 DCAF8L2P0C7V8 631 aa27.5■■□□□ 1.99
PRAME-206ENST00000406503 MYO15BQ96JP2 1530 aa27.5■■□□□ 1.99
PRAME-206ENST00000406503 BICRAQ9NZM4 1560 aa27.4■■□□□ 1.98
PRAME-206ENST00000406503 PABPN1Q86U42 306 aaKnown RBP eCLIP27.4■■□□□ 1.98
PRAME-206ENST00000406503 ZCCHC6Q5VYS8 1495 aaKnown RBP27.23■■□□□ 1.95
PRAME-206ENST00000406503 DCAF1Q9Y4B6 1507 aa27.13■■□□□ 1.93
PRAME-206ENST00000406503 SCRIBQ14160 1630 aa26.9■■□□□ 1.9
PRAME-206ENST00000406503 SHROOM4Q9ULL8 1493 aa26.89■■□□□ 1.9
PRAME-206ENST00000406503 CC2D2AQ9P2K1 1620 aa26.76■■□□□ 1.87
PRAME-206ENST00000406503 EIF4G1Q04637 1599 aaKnown RBP26.67■■□□□ 1.86
PRAME-206ENST00000406503 CECR2Q9BXF3 1484 aa26.58■■□□□ 1.85
PRAME-206ENST00000406503 NCAPD3P42695 1498 aa25.72■■□□□ 1.71
PRAME-206ENST00000406503 SMARCA4P51532 1647 aa25.69■■□□□ 1.7
PRAME-206ENST00000406503 ATAD2BQ9ULI0 1458 aa25.66■■□□□ 1.7
PRAME-206ENST00000406503 HMGXB3Q12766 1538 aa25.58■■□□□ 1.69
PRAME-206ENST00000406503 SMARCA2P51531 1590 aa25.56■■□□□ 1.68
PRAME-206ENST00000406503 BAZ1AQ9NRL2 1556 aaPredicted RBP25.47■■□□□ 1.67
PRAME-206ENST00000406503 CUX2O14529 1486 aa25.47■■□□□ 1.67
PRAME-206ENST00000406503 DNAJC5Q9H3Z4 198 aa25.46■■□□□ 1.67
PRAME-206ENST00000406503 PEG3Q9GZU2 1588 aa25.44■■□□□ 1.66
PRAME-206ENST00000406503 ERCC6Q03468 1493 aa25.42■■□□□ 1.66
PRAME-206ENST00000406503 NESP48681 1621 aa25.4■■□□□ 1.66
PRAME-206ENST00000406503 BAZ1BQ9UIG0 1483 aaKnown RBP25.36■■□□□ 1.65
PRAME-206ENST00000406503 MROH2BQ7Z745 1585 aa25.33■■□□□ 1.65
PRAME-206ENST00000406503 THOC2Q8NI27 1593 aaKnown RBP25.24■■□□□ 1.63
PRAME-206ENST00000406503 LAMC3Q9Y6N6 1575 aa25.2■■□□□ 1.62
PRAME-206ENST00000406503 KIF21AQ7Z4S6 1674 aa25.19■■□□□ 1.62
PRAME-206ENST00000406503 WIZO95785 1651 aa25.07■■□□□ 1.6
PRAME-206ENST00000406503 PDS5BQ9NTI5 1447 aa24.93■■□□□ 1.58
PRAME-206ENST00000406503 CADPSQ9ULU8 1353 aa24.89■■□□□ 1.57
PRAME-206ENST00000406503 WDR62O43379 1518 aa24.81■■□□□ 1.56
PRAME-206ENST00000406503 MRC2Q9UBG0 1479 aa24.79■■□□□ 1.56
PRAME-206ENST00000406503 RSF1Q96T23 1441 aaPredicted RBP24.71■■□□□ 1.55
PRAME-206ENST00000406503 TOP2AP11388 1531 aaKnown RBP24.69■■□□□ 1.54
PRAME-206ENST00000406503 CEP164Q9UPV0 1460 aa24.68■■□□□ 1.54
PRAME-206ENST00000406503 CFTRP13569 1480 aa24.65■■□□□ 1.54
PRAME-206ENST00000406503 FANCD2Q9BXW9 1451 aa24.64■■□□□ 1.54
PRAME-206ENST00000406503 PRDM2Q13029 1718 aa24.62■■□□□ 1.53
PRAME-206ENST00000406503 URB2Q14146 1524 aaKnown RBP24.51■■□□□ 1.51
PRAME-206ENST00000406503 CCDC88BA6NC98 1476 aa24.38■■□□□ 1.49
PRAME-206ENST00000406503 TRIM41Q8WV44 630 aa24.26■■□□□ 1.47
PRAME-206ENST00000406503 TOPBP1Q92547 1522 aa24.21■■□□□ 1.47
PRAME-206ENST00000406503 ZNF608Q9ULD9 1512 aaPredicted RBP24.21■■□□□ 1.47
PRAME-206ENST00000406503 IFT140Q96RY7 1462 aa24.17■■□□□ 1.46
PRAME-206ENST00000406503 OSCARQ8IYS5 282 aa24.16■■□□□ 1.46
PRAME-206ENST00000406503 EIF4G3O43432 1585 aaKnown RBP24.13■■□□□ 1.45
PRAME-206ENST00000406503 DNMBPQ6XZF7 1577 aa24.13■■□□□ 1.45
PRAME-206ENST00000406503 RIMBP3CA6NJZ7 1639 aa24.09■■□□□ 1.45
PRAME-206ENST00000406503 RIMBP3BA6NNM3 1639 aa24.09■■□□□ 1.45
PRAME-206ENST00000406503 TARBP1Q13395 1621 aaKnown RBP24.09■■□□□ 1.45
PRAME-206ENST00000406503 RIMBP3Q9UFD9 1639 aa24.09■■□□□ 1.45
PRAME-206ENST00000406503 ABCC8Q09428 1581 aa24.07■■□□□ 1.44
PRAME-206ENST00000406503 CHD1O14646 1710 aa24.03■■□□□ 1.44
PRAME-206ENST00000406503 POLA1P09884 1462 aaPredicted RBP23.96■■□□□ 1.43
PRAME-206ENST00000406503 ARHGEF11O15085 1522 aa23.94■■□□□ 1.42
PRAME-206ENST00000406503 AQRO60306 1485 aaKnown RBP eCLIP23.93■■□□□ 1.422e-41■■■■■ 46.3
PRAME-206ENST00000406503 RAD54L2Q9Y4B4 1467 aa23.86■■□□□ 1.41
PRAME-206ENST00000406503 CUX1P39880 1505 aa23.8■■□□□ 1.4
PRAME-206ENST00000406503 WDR97A6NE52 1622 aa23.8■■□□□ 1.4
PRAME-206ENST00000406503 FGD5Q6ZNL6 1462 aa23.79■■□□□ 1.4
PRAME-206ENST00000406503 SOGA1O94964 1423 aa23.76■■□□□ 1.39
PRAME-206ENST00000406503 TDRD9Q8NDG6 1382 aaKnown RBP23.73■■□□□ 1.39
PRAME-206ENST00000406503 ARAP1Q96P48 1450 aa23.71■■□□□ 1.39
PRAME-206ENST00000406503 SNAPC4Q5SXM2 1469 aa23.7■■□□□ 1.38
PRAME-206ENST00000406503 PBRM1Q86U86 1689 aa23.68■■□□□ 1.38
PRAME-206ENST00000406503 CLASP1Q7Z460 1538 aa23.68■■□□□ 1.38
PRAME-206ENST00000406503 FBLN2P98095 1184 aa23.63■■□□□ 1.37
PRAME-206ENST00000406503 MAGI1Q96QZ7 1491 aaPredicted RBP23.62■■□□□ 1.37
PRAME-206ENST00000406503 CYB5RLQ6IPT4 315 aa23.62■■□□□ 1.37
PRAME-206ENST00000406503 GRIN2BQ13224 1484 aa23.59■■□□□ 1.37
PRAME-206ENST00000406503 ABCA5Q8WWZ7 1642 aa23.59■■□□□ 1.37
PRAME-206ENST00000406503 SYNJ1O43426 1573 aa23.58■■□□□ 1.37
PRAME-206ENST00000406503 SYNJ2O15056 1496 aa23.54■■□□□ 1.36
PRAME-206ENST00000406503 ABCA10Q8WWZ4 1543 aa23.52■■□□□ 1.36
PRAME-206ENST00000406503 GAPVD1Q14C86 1478 aa23.5■■□□□ 1.35
PRAME-206ENST00000406503 BIVM-ERCC5R4GMW8 1640 aa23.47■■□□□ 1.35
PRAME-206ENST00000406503 CHMP7Q8WUX9 453 aaPredicted RBP23.46■■□□□ 1.35
PRAME-206ENST00000406503 SUPT5HO00267 1087 aaKnown RBP23.42■■□□□ 1.34
PRAME-206ENST00000406503 TOP2BQ02880 1626 aa23.41■■□□□ 1.34
PRAME-206ENST00000406503 ADAMTS12P58397 1594 aa23.38■■□□□ 1.33
PRAME-206ENST00000406503 ERCC6L2Q5T890 1561 aa23.33■■□□□ 1.33
PRAME-206ENST00000406503 GRIN2AQ12879 1464 aa23.33■■□□□ 1.33
PRAME-206ENST00000406503 CEP170Q5SW79 1584 aa23.32■■□□□ 1.32
PRAME-206ENST00000406503 TRHP20396 242 aaPredicted RBP23.32■■□□□ 1.32
PRAME-206ENST00000406503 WRNQ14191 1432 aaPredicted RBP eCLIP23.31■■□□□ 1.32
PRAME-206ENST00000406503 SHROOM2Q13796 1616 aa23.26■■□□□ 1.31
PRAME-206ENST00000406503 NUP160Q12769 1436 aa23.26■■□□□ 1.31
PRAME-206ENST00000406503 ERICH3Q5RHP9 1530 aa23.22■■□□□ 1.31
PRAME-206ENST00000406503 FHAD1B1AJZ9 1412 aa23.18■■□□□ 1.3
PRAME-206ENST00000406503 RUSC2Q8N2Y8 1516 aa23.08■■□□□ 1.28
PRAME-206ENST00000406503 KIF13AQ9H1H9 1805 aa23.07■■□□□ 1.28
PRAME-206ENST00000406503 PRG4Q92954 1404 aaPredicted RBP22.97■■□□□ 1.27
PRAME-206ENST00000406503 CUL7Q14999 1698 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms