RNA–Protein interactions for RNA: ENST00000543184.5

PRAME-214, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PRAME, Length 2,758 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-214ENST00000543184 NISCHQ9Y2I1 1504 aa29.78■■■□□ 2.36
PRAME-214ENST00000543184 CCDC180Q9P1Z9 1646 aa25.81■■□□□ 1.72
PRAME-214ENST00000543184 DCAF8L2P0C7V8 631 aa25.49■■□□□ 1.67
PRAME-214ENST00000543184 ABCC9O60706 1549 aa25.44■■□□□ 1.66
PRAME-214ENST00000543184 ZCCHC6Q5VYS8 1495 aaKnown RBP24.89■■□□□ 1.58
PRAME-214ENST00000543184 SHROOM4Q9ULL8 1493 aa24.78■■□□□ 1.56
PRAME-214ENST00000543184 SUPT5HO00267 1087 aaKnown RBP24.48■■□□□ 1.51
PRAME-214ENST00000543184 DCAF1Q9Y4B6 1507 aa24.29■■□□□ 1.48
PRAME-214ENST00000543184 NACADO15069 1562 aa24.26■■□□□ 1.47
PRAME-214ENST00000543184 RB1CC1Q8TDY2 1594 aa24.23■■□□□ 1.47
PRAME-214ENST00000543184 SCRIBQ14160 1630 aa24.21■■□□□ 1.47
PRAME-214ENST00000543184 PABPN1Q86U42 306 aaKnown RBP eCLIP24.13■■□□□ 1.45
PRAME-214ENST00000543184 MYO15BQ96JP2 1530 aa24.08■■□□□ 1.45
PRAME-214ENST00000543184 UNC13AQ9UPW8 1703 aa23.74■■□□□ 1.39
PRAME-214ENST00000543184 CHIC1Q5VXU3 224 aa23.72■■□□□ 1.39
PRAME-214ENST00000543184 HRCP23327 699 aa23.72■■□□□ 1.39
PRAME-214ENST00000543184 PCGF6Q9BYE7 350 aa23.69■■□□□ 1.38
PRAME-214ENST00000543184 PPARGC1BQ86YN6 1023 aaKnown RBP23.61■■□□□ 1.37
PRAME-214ENST00000543184 BICRAQ9NZM4 1560 aa23.6■■□□□ 1.37
PRAME-214ENST00000543184 CECR2Q9BXF3 1484 aa23.44■■□□□ 1.34
PRAME-214ENST00000543184 LOC105371045A0A1W2PR82 267 aa23.35■■□□□ 1.33
PRAME-214ENST00000543184 MROH2BQ7Z745 1585 aa23.15■■□□□ 1.3
PRAME-214ENST00000543184 RSF1Q96T23 1441 aaPredicted RBP23.09■■□□□ 1.29
PRAME-214ENST00000543184 BAZ1AQ9NRL2 1556 aaPredicted RBP22.96■■□□□ 1.27
PRAME-214ENST00000543184 EIF4G1Q04637 1599 aaKnown RBP22.96■■□□□ 1.27
PRAME-214ENST00000543184 DNAJC5BQ9UF47 199 aa22.96■■□□□ 1.27
PRAME-214ENST00000543184 SMARCA4P51532 1647 aa22.95■■□□□ 1.26
PRAME-214ENST00000543184 WIZO95785 1651 aa22.93■■□□□ 1.26
PRAME-214ENST00000543184 EHMT2Q96KQ7 1210 aa22.83■■□□□ 1.25
PRAME-214ENST00000543184 TRIM26Q12899 539 aaPredicted RBP22.79■■□□□ 1.24
PRAME-214ENST00000543184 CC2D2AQ9P2K1 1620 aa22.76■■□□□ 1.23
PRAME-214ENST00000543184 ATAD2BQ9ULI0 1458 aa22.76■■□□□ 1.23
PRAME-214ENST00000543184 FAM9AQ8IZU1 332 aaPredicted RBP22.73■■□□□ 1.23
PRAME-214ENST00000543184 BAZ1BQ9UIG0 1483 aaKnown RBP22.64■■□□□ 1.22
PRAME-214ENST00000543184 SMARCA2P51531 1590 aa22.57■■□□□ 1.2
PRAME-214ENST00000543184 TRIM41Q8WV44 630 aa22.51■■□□□ 1.19
PRAME-214ENST00000543184 NCAPD3P42695 1498 aa22.51■■□□□ 1.19
PRAME-214ENST00000543184 TOP2AP11388 1531 aaKnown RBP22.48■■□□□ 1.19
PRAME-214ENST00000543184 PEG3Q9GZU2 1588 aa22.48■■□□□ 1.19
PRAME-214ENST00000543184 CCDC88BA6NC98 1476 aa22.44■■□□□ 1.18
PRAME-214ENST00000543184 HMGXB3Q12766 1538 aa22.33■■□□□ 1.17
PRAME-214ENST00000543184 SCAF1Q9H7N4 1312 aaKnown RBP22.33■■□□□ 1.16
PRAME-214ENST00000543184 ZEB1P37275 1124 aaPredicted RBP22.28■■□□□ 1.16
PRAME-214ENST00000543184 NESP48681 1621 aa22.21■■□□□ 1.15
PRAME-214ENST00000543184 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.15■■□□□ 1.14
PRAME-214ENST00000543184 TTBK1Q5TCY1 1321 aaPredicted RBP22.13■■□□□ 1.13
PRAME-214ENST00000543184 CADPSQ9ULU8 1353 aa22.04■■□□□ 1.12
PRAME-214ENST00000543184 ABCC8Q09428 1581 aa22■■□□□ 1.11
PRAME-214ENST00000543184 CCER1Q8TC90 406 aaPredicted RBP21.98■■□□□ 1.11
PRAME-214ENST00000543184 CFTRP13569 1480 aa21.96■■□□□ 1.11
PRAME-214ENST00000543184 NEUROD1Q13562 356 aa21.91■■□□□ 1.1
PRAME-214ENST00000543184 PELP1Q8IZL8 1130 aaKnown RBP21.87■■□□□ 1.09
PRAME-214ENST00000543184 FANCD2Q9BXW9 1451 aa21.83■■□□□ 1.09
PRAME-214ENST00000543184 ACIN1Q9UKV3 1341 aaKnown RBP21.8■■□□□ 1.08
PRAME-214ENST00000543184 ERCC6Q03468 1493 aa21.77■■□□□ 1.08
PRAME-214ENST00000543184 WRNQ14191 1432 aaPredicted RBP eCLIP21.76■■□□□ 1.07
PRAME-214ENST00000543184 DIEXFQ68CQ4 756 aaKnown RBP21.74■■□□□ 1.07
PRAME-214ENST00000543184 LAMC3Q9Y6N6 1575 aa21.74■■□□□ 1.07
PRAME-214ENST00000543184 PDS5BQ9NTI5 1447 aa21.73■■□□□ 1.07
PRAME-214ENST00000543184 GTF3C3Q9Y5Q9 886 aa21.73■■□□□ 1.07
PRAME-214ENST00000543184 CEP164Q9UPV0 1460 aa21.69■■□□□ 1.06
PRAME-214ENST00000543184 KIF21AQ7Z4S6 1674 aa21.67■■□□□ 1.06
PRAME-214ENST00000543184 SYNJ1O43426 1573 aa21.67■■□□□ 1.06
PRAME-214ENST00000543184 CUX1P39880 1505 aa21.62■■□□□ 1.05
PRAME-214ENST00000543184 YTHDC1Q96MU7 727 aaKnown RBP21.59■■□□□ 1.05
PRAME-214ENST00000543184 URB2Q14146 1524 aaKnown RBP21.58■■□□□ 1.05
PRAME-214ENST00000543184 SOGA1O94964 1423 aa21.54■■□□□ 1.04
PRAME-214ENST00000543184 RUSC2Q8N2Y8 1516 aa21.52■■□□□ 1.03
PRAME-214ENST00000543184 RAD54L2Q9Y4B4 1467 aa21.51■■□□□ 1.03
PRAME-214ENST00000543184 TOPBP1Q92547 1522 aa21.51■■□□□ 1.03
PRAME-214ENST00000543184 PRDM2Q13029 1718 aa21.5■■□□□ 1.03
PRAME-214ENST00000543184 CENPBP07199 599 aaPredicted RBP21.5■■□□□ 1.03
PRAME-214ENST00000543184 FGD5Q6ZNL6 1462 aa21.49■■□□□ 1.03
PRAME-214ENST00000543184 UBTFP17480 764 aaKnown RBP21.48■■□□□ 1.03
PRAME-214ENST00000543184 MRC2Q9UBG0 1479 aa21.45■■□□□ 1.03
PRAME-214ENST00000543184 CEP162Q5TB80 1403 aa21.45■■□□□ 1.02
PRAME-214ENST00000543184 TOP2BQ02880 1626 aa21.43■■□□□ 1.02
PRAME-214ENST00000543184 POLA1P09884 1462 aaPredicted RBP21.43■■□□□ 1.02
PRAME-214ENST00000543184 TDRD9Q8NDG6 1382 aaKnown RBP21.42■■□□□ 1.02
PRAME-214ENST00000543184 HNRNPUL2Q1KMD3 747 aaKnown RBP21.4■■□□□ 1.02
PRAME-214ENST00000543184 DNMBPQ6XZF7 1577 aa21.39■■□□□ 1.01
PRAME-214ENST00000543184 ZNF316A6NFI3 1004 aaPredicted RBP21.36■■□□□ 1.01
PRAME-214ENST00000543184 CUX2O14529 1486 aa21.34■■□□□ 1.01
PRAME-214ENST00000543184 RANGAP1P46060 587 aaPredicted RBP21.34■■□□□ 1.01
PRAME-214ENST00000543184 THOC2Q8NI27 1593 aaKnown RBP21.32■■□□□ 1
PRAME-214ENST00000543184 BIVM-ERCC5R4GMW8 1640 aa21.32■■□□□ 1
PRAME-214ENST00000543184 MIER1Q8N108 512 aa21.31■■□□□ 1
PRAME-214ENST00000543184 CSRNP3Q8WYN3 585 aa21.3■■□□□ 1
PRAME-214ENST00000543184 AQRO60306 1485 aaKnown RBP eCLIP21.29■■□□□ 12e-41■■■■■ 46.3
PRAME-214ENST00000543184 ZNF608Q9ULD9 1512 aaPredicted RBP21.29■■□□□ 1
PRAME-214ENST00000543184 WDR62O43379 1518 aa21.27■■□□□ 1
PRAME-214ENST00000543184 TNIKQ9UKE5 1360 aa21.23■□□□□ 0.99
PRAME-214ENST00000543184 FBLN2P98095 1184 aa21.2■□□□□ 0.98
PRAME-214ENST00000543184 KIF27Q86VH2 1401 aa21.19■□□□□ 0.98
PRAME-214ENST00000543184 ABCA10Q8WWZ4 1543 aa21.12■□□□□ 0.97
PRAME-214ENST00000543184 IGF1RP08069 1367 aa21.11■□□□□ 0.97
PRAME-214ENST00000543184 TARBP1Q13395 1621 aaKnown RBP21.11■□□□□ 0.97
PRAME-214ENST00000543184 GAPVD1Q14C86 1478 aa21.1■□□□□ 0.97
PRAME-214ENST00000543184 IFT140Q96RY7 1462 aa21.1■□□□□ 0.97
PRAME-214ENST00000543184 RAPGEF2Q9Y4G8 1499 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms