RNA–Protein interactions for RNA: ENST00000405655.7

PRAME-205, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PRAME, Length 2,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-205ENST00000405655 NISCHQ9Y2I1 1504 aa31.12■■■□□ 2.57
PRAME-205ENST00000405655 CCDC180Q9P1Z9 1646 aa26.83■■□□□ 1.89
PRAME-205ENST00000405655 ZCCHC6Q5VYS8 1495 aaKnown RBP26.16■■□□□ 1.78
PRAME-205ENST00000405655 SHROOM4Q9ULL8 1493 aa26.14■■□□□ 1.77
PRAME-205ENST00000405655 DCAF8L2P0C7V8 631 aa26.12■■□□□ 1.77
PRAME-205ENST00000405655 ABCC9O60706 1549 aa25.56■■□□□ 1.68
PRAME-205ENST00000405655 DCAF1Q9Y4B6 1507 aa25.43■■□□□ 1.66
PRAME-205ENST00000405655 SUPT5HO00267 1087 aaKnown RBP25.22■■□□□ 1.63
PRAME-205ENST00000405655 MYO15BQ96JP2 1530 aa25.09■■□□□ 1.61
PRAME-205ENST00000405655 SCRIBQ14160 1630 aa25.09■■□□□ 1.61
PRAME-205ENST00000405655 NACADO15069 1562 aa24.9■■□□□ 1.58
PRAME-205ENST00000405655 RB1CC1Q8TDY2 1594 aa24.68■■□□□ 1.54
PRAME-205ENST00000405655 UNC13AQ9UPW8 1703 aa24.47■■□□□ 1.51
PRAME-205ENST00000405655 CECR2Q9BXF3 1484 aa24.42■■□□□ 1.5
PRAME-205ENST00000405655 RSF1Q96T23 1441 aaPredicted RBP24.35■■□□□ 1.49
PRAME-205ENST00000405655 PABPN1Q86U42 306 aaKnown RBP eCLIP24.32■■□□□ 1.48
PRAME-205ENST00000405655 MROH2BQ7Z745 1585 aa24.23■■□□□ 1.47
PRAME-205ENST00000405655 BICRAQ9NZM4 1560 aa24.14■■□□□ 1.45
PRAME-205ENST00000405655 CHIC1Q5VXU3 224 aa24.12■■□□□ 1.45
PRAME-205ENST00000405655 WIZO95785 1651 aa24.1■■□□□ 1.45
PRAME-205ENST00000405655 BAZ1AQ9NRL2 1556 aaPredicted RBP23.91■■□□□ 1.42
PRAME-205ENST00000405655 SMARCA4P51532 1647 aa23.88■■□□□ 1.41
PRAME-205ENST00000405655 TOP2AP11388 1531 aaKnown RBP23.59■■□□□ 1.37
PRAME-205ENST00000405655 CCDC88BA6NC98 1476 aa23.53■■□□□ 1.36
PRAME-205ENST00000405655 SMARCA2P51531 1590 aa23.49■■□□□ 1.35
PRAME-205ENST00000405655 LOC105371045A0A1W2PR82 267 aa23.47■■□□□ 1.35
PRAME-205ENST00000405655 TRIM41Q8WV44 630 aa23.47■■□□□ 1.35
PRAME-205ENST00000405655 ATAD2BQ9ULI0 1458 aa23.43■■□□□ 1.34
PRAME-205ENST00000405655 PEG3Q9GZU2 1588 aa23.39■■□□□ 1.33
PRAME-205ENST00000405655 FAM9AQ8IZU1 332 aaPredicted RBP23.38■■□□□ 1.33
PRAME-205ENST00000405655 EIF4G1Q04637 1599 aaKnown RBP23.38■■□□□ 1.33
PRAME-205ENST00000405655 BAZ1BQ9UIG0 1483 aaKnown RBP23.3■■□□□ 1.32
PRAME-205ENST00000405655 ABCC8Q09428 1581 aa23.3■■□□□ 1.32
PRAME-205ENST00000405655 EHMT2Q96KQ7 1210 aa23.29■■□□□ 1.32
PRAME-205ENST00000405655 NCAPD3P42695 1498 aa23.06■■□□□ 1.28
PRAME-205ENST00000405655 CC2D2AQ9P2K1 1620 aa22.99■■□□□ 1.27
PRAME-205ENST00000405655 HMGXB3Q12766 1538 aa22.98■■□□□ 1.27
PRAME-205ENST00000405655 SOGA1O94964 1423 aa22.89■■□□□ 1.26
PRAME-205ENST00000405655 RUSC2Q8N2Y8 1516 aa22.88■■□□□ 1.25
PRAME-205ENST00000405655 SYNJ1O43426 1573 aa22.87■■□□□ 1.25
PRAME-205ENST00000405655 WRNQ14191 1432 aaPredicted RBP eCLIP22.86■■□□□ 1.25
PRAME-205ENST00000405655 DNAJC5BQ9UF47 199 aa22.8■■□□□ 1.24
PRAME-205ENST00000405655 CFTRP13569 1480 aa22.68■■□□□ 1.22
PRAME-205ENST00000405655 PCGF6Q9BYE7 350 aa22.63■■□□□ 1.21
PRAME-205ENST00000405655 CSRNP3Q8WYN3 585 aa22.6■■□□□ 1.21
PRAME-205ENST00000405655 CUX1P39880 1505 aa22.59■■□□□ 1.21
PRAME-205ENST00000405655 NESP48681 1621 aa22.58■■□□□ 1.21
PRAME-205ENST00000405655 TOP2BQ02880 1626 aa22.58■■□□□ 1.21
PRAME-205ENST00000405655 CADPSQ9ULU8 1353 aa22.57■■□□□ 1.2
PRAME-205ENST00000405655 PRDM2Q13029 1718 aa22.54■■□□□ 1.2
PRAME-205ENST00000405655 PPARGC1BQ86YN6 1023 aaKnown RBP22.53■■□□□ 1.2
PRAME-205ENST00000405655 BIVM-ERCC5R4GMW8 1640 aa22.52■■□□□ 1.2
PRAME-205ENST00000405655 UBTFP17480 764 aaKnown RBP22.48■■□□□ 1.19
PRAME-205ENST00000405655 EEA1Q15075 1411 aa22.42■■□□□ 1.18
PRAME-205ENST00000405655 FANCD2Q9BXW9 1451 aa22.39■■□□□ 1.17
PRAME-205ENST00000405655 RANGAP1P46060 587 aaPredicted RBP22.38■■□□□ 1.17
PRAME-205ENST00000405655 CEP162Q5TB80 1403 aa22.35■■□□□ 1.17
PRAME-205ENST00000405655 RAPGEF2Q9Y4G8 1499 aa22.35■■□□□ 1.17
PRAME-205ENST00000405655 GOLGA3Q08378 1498 aa22.33■■□□□ 1.17
PRAME-205ENST00000405655 TNIKQ9UKE5 1360 aa22.32■■□□□ 1.16
PRAME-205ENST00000405655 TTBK1Q5TCY1 1321 aaPredicted RBP22.31■■□□□ 1.16
PRAME-205ENST00000405655 FGD5Q6ZNL6 1462 aa22.28■■□□□ 1.16
PRAME-205ENST00000405655 CEP164Q9UPV0 1460 aa22.27■■□□□ 1.16
PRAME-205ENST00000405655 KIF21BO75037 1637 aa22.27■■□□□ 1.15
PRAME-205ENST00000405655 TRIM26Q12899 539 aaPredicted RBP22.25■■□□□ 1.15
PRAME-205ENST00000405655 CUX2O14529 1486 aa22.21■■□□□ 1.15
PRAME-205ENST00000405655 RAD54L2Q9Y4B4 1467 aa22.21■■□□□ 1.15
PRAME-205ENST00000405655 KIF27Q86VH2 1401 aa22.19■■□□□ 1.14
PRAME-205ENST00000405655 LAMC3Q9Y6N6 1575 aa22.19■■□□□ 1.14
PRAME-205ENST00000405655 KIF21AQ7Z4S6 1674 aa22.18■■□□□ 1.14
PRAME-205ENST00000405655 TOPBP1Q92547 1522 aa22.17■■□□□ 1.14
PRAME-205ENST00000405655 URB2Q14146 1524 aaKnown RBP22.15■■□□□ 1.14
PRAME-205ENST00000405655 PRXQ9BXM0 1461 aa22.14■■□□□ 1.13
PRAME-205ENST00000405655 DNMBPQ6XZF7 1577 aa22.13■■□□□ 1.13
PRAME-205ENST00000405655 POLA1P09884 1462 aaPredicted RBP22.11■■□□□ 1.13
PRAME-205ENST00000405655 CLIP1P30622 1438 aa22.09■■□□□ 1.13
PRAME-205ENST00000405655 IGF1RP08069 1367 aa22.09■■□□□ 1.13
PRAME-205ENST00000405655 PDS5BQ9NTI5 1447 aa22.05■■□□□ 1.12
PRAME-205ENST00000405655 HRCP23327 699 aa22.01■■□□□ 1.11
PRAME-205ENST00000405655 ERICH3Q5RHP9 1530 aa22.01■■□□□ 1.11
PRAME-205ENST00000405655 TDRD9Q8NDG6 1382 aaKnown RBP21.97■■□□□ 1.11
PRAME-205ENST00000405655 CARMIL1Q5VZK9 1371 aa21.96■■□□□ 1.11
PRAME-205ENST00000405655 ABCA10Q8WWZ4 1543 aa21.94■■□□□ 1.1
PRAME-205ENST00000405655 WDR97A6NE52 1622 aa21.88■■□□□ 1.09
PRAME-205ENST00000405655 ARAP1Q96P48 1450 aa21.87■■□□□ 1.09
PRAME-205ENST00000405655 VPS8Q8N3P4 1428 aa21.86■■□□□ 1.09
PRAME-205ENST00000405655 P3H3Q8IVL6 736 aa21.81■■□□□ 1.08
PRAME-205ENST00000405655 TARBP1Q13395 1621 aaKnown RBP21.8■■□□□ 1.08
PRAME-205ENST00000405655 ARHGAP35Q9NRY4 1499 aa21.8■■□□□ 1.08
PRAME-205ENST00000405655 MRC2Q9UBG0 1479 aa21.8■■□□□ 1.08
PRAME-205ENST00000405655 AQRO60306 1485 aaKnown RBP eCLIP21.78■■□□□ 1.082e-41■■■■■ 46.3
PRAME-205ENST00000405655 ABCA5Q8WWZ7 1642 aa21.77■■□□□ 1.08
PRAME-205ENST00000405655 GAPVD1Q14C86 1478 aa21.77■■□□□ 1.08
PRAME-205ENST00000405655 ERCC6Q03468 1493 aa21.73■■□□□ 1.07
PRAME-205ENST00000405655 KANK4Q5T7N3 995 aaPredicted RBP21.71■■□□□ 1.07
PRAME-205ENST00000405655 ZNF608Q9ULD9 1512 aaPredicted RBP21.71■■□□□ 1.07
PRAME-205ENST00000405655 APLP2Q06481 763 aa21.69■■□□□ 1.06
PRAME-205ENST00000405655 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.68■■□□□ 1.06
PRAME-205ENST00000405655 CUL7Q14999 1698 aa21.68■■□□□ 1.06
PRAME-205ENST00000405655 WDR62O43379 1518 aa21.64■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms