RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 NISCHQ9Y2I1 1504 aa29.99■■■□□ 2.39
SQSTM1-201ENST00000360718 CCDC180Q9P1Z9 1646 aa26.2■■□□□ 1.79
SQSTM1-201ENST00000360718 ZCCHC6Q5VYS8 1495 aaKnown RBP25.17■■□□□ 1.62
SQSTM1-201ENST00000360718 ABCC9O60706 1549 aa25■■□□□ 1.59
SQSTM1-201ENST00000360718 DCAF8L2P0C7V8 631 aa24.82■■□□□ 1.56
SQSTM1-201ENST00000360718 DCAF1Q9Y4B6 1507 aa24.75■■□□□ 1.55
SQSTM1-201ENST00000360718 MYO15BQ96JP2 1530 aa24.51■■□□□ 1.51
SQSTM1-201ENST00000360718 NACADO15069 1562 aa24.43■■□□□ 1.5
SQSTM1-201ENST00000360718 SHROOM4Q9ULL8 1493 aa24.4■■□□□ 1.5
SQSTM1-201ENST00000360718 RB1CC1Q8TDY2 1594 aa24.27■■□□□ 1.48
SQSTM1-201ENST00000360718 SCRIBQ14160 1630 aa24.14■■□□□ 1.45
SQSTM1-201ENST00000360718 UNC13AQ9UPW8 1703 aa23.89■■□□□ 1.41
SQSTM1-201ENST00000360718 BICRAQ9NZM4 1560 aa23.63■■□□□ 1.37
SQSTM1-201ENST00000360718 PABPN1Q86U42 306 aaKnown RBP eCLIP23.55■■□□□ 1.362e-7■□□□□ 9.6
SQSTM1-201ENST00000360718 CECR2Q9BXF3 1484 aa23.38■■□□□ 1.33
SQSTM1-201ENST00000360718 SUPT5HO00267 1087 aaKnown RBP23.35■■□□□ 1.33
SQSTM1-201ENST00000360718 RSF1Q96T23 1441 aaPredicted RBP23.22■■□□□ 1.31
SQSTM1-201ENST00000360718 MROH2BQ7Z745 1585 aa23.21■■□□□ 1.31
SQSTM1-201ENST00000360718 BAZ1AQ9NRL2 1556 aaPredicted RBP23.14■■□□□ 1.3
SQSTM1-201ENST00000360718 SMARCA4P51532 1647 aa23.1■■□□□ 1.29
SQSTM1-201ENST00000360718 WIZO95785 1651 aa23.02■■□□□ 1.28
SQSTM1-201ENST00000360718 EIF4G1Q04637 1599 aaKnown RBP22.9■■□□□ 1.26
SQSTM1-201ENST00000360718 PEG3Q9GZU2 1588 aa22.81■■□□□ 1.24
SQSTM1-201ENST00000360718 ATAD2BQ9ULI0 1458 aa22.76■■□□□ 1.23
SQSTM1-201ENST00000360718 TOP2AP11388 1531 aaKnown RBP22.72■■□□□ 1.23
SQSTM1-201ENST00000360718 SMARCA2P51531 1590 aa22.69■■□□□ 1.22
SQSTM1-201ENST00000360718 CC2D2AQ9P2K1 1620 aa22.61■■□□□ 1.21
SQSTM1-201ENST00000360718 BAZ1BQ9UIG0 1483 aaKnown RBP22.6■■□□□ 1.21
SQSTM1-201ENST00000360718 NCAPD3P42695 1498 aa22.57■■□□□ 1.2
SQSTM1-201ENST00000360718 HMGXB3Q12766 1538 aa22.52■■□□□ 1.2
SQSTM1-201ENST00000360718 CCDC88BA6NC98 1476 aa22.51■■□□□ 1.19
SQSTM1-201ENST00000360718 DNAJC5BQ9UF47 199 aa22.27■■□□□ 1.16
SQSTM1-201ENST00000360718 CHIC1Q5VXU3 224 aa22.26■■□□□ 1.15
SQSTM1-201ENST00000360718 CFTRP13569 1480 aa22.03■■□□□ 1.12
SQSTM1-201ENST00000360718 ABCC8Q09428 1581 aa22.02■■□□□ 1.12
SQSTM1-201ENST00000360718 CADPSQ9ULU8 1353 aa21.98■■□□□ 1.11
SQSTM1-201ENST00000360718 NESP48681 1621 aa21.92■■□□□ 1.1
SQSTM1-201ENST00000360718 TRIM41Q8WV44 630 aa21.92■■□□□ 1.1
SQSTM1-201ENST00000360718 PRDM2Q13029 1718 aa21.92■■□□□ 1.1
SQSTM1-201ENST00000360718 WRNQ14191 1432 aaPredicted RBP eCLIP21.83■■□□□ 1.08
SQSTM1-201ENST00000360718 LAMC3Q9Y6N6 1575 aa21.82■■□□□ 1.08
SQSTM1-201ENST00000360718 SYNJ1O43426 1573 aa21.8■■□□□ 1.08
SQSTM1-201ENST00000360718 FANCD2Q9BXW9 1451 aa21.75■■□□□ 1.07
SQSTM1-201ENST00000360718 CUX1P39880 1505 aa21.7■■□□□ 1.06
SQSTM1-201ENST00000360718 TOP2BQ02880 1626 aa21.68■■□□□ 1.06
SQSTM1-201ENST00000360718 BIVM-ERCC5R4GMW8 1640 aa21.67■■□□□ 1.06
SQSTM1-201ENST00000360718 KIF21AQ7Z4S6 1674 aa21.65■■□□□ 1.06
SQSTM1-201ENST00000360718 PDS5BQ9NTI5 1447 aa21.63■■□□□ 1.05
SQSTM1-201ENST00000360718 CEP164Q9UPV0 1460 aa21.61■■□□□ 1.05
SQSTM1-201ENST00000360718 FAM9AQ8IZU1 332 aaPredicted RBP21.58■■□□□ 1.04
SQSTM1-201ENST00000360718 SOGA1O94964 1423 aa21.56■■□□□ 1.04
SQSTM1-201ENST00000360718 URB2Q14146 1524 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-201ENST00000360718 RUSC2Q8N2Y8 1516 aa21.52■■□□□ 1.04
SQSTM1-201ENST00000360718 DNMBPQ6XZF7 1577 aa21.51■■□□□ 1.03
SQSTM1-201ENST00000360718 TOPBP1Q92547 1522 aa21.51■■□□□ 1.03
SQSTM1-201ENST00000360718 FGD5Q6ZNL6 1462 aa21.48■■□□□ 1.03
SQSTM1-201ENST00000360718 LOC105371045A0A1W2PR82 267 aa21.45■■□□□ 1.02
SQSTM1-201ENST00000360718 POLA1P09884 1462 aaPredicted RBP21.4■■□□□ 1.02
SQSTM1-201ENST00000360718 MRC2Q9UBG0 1479 aa21.4■■□□□ 1.02
SQSTM1-201ENST00000360718 ERCC6Q03468 1493 aa21.39■■□□□ 1.01
SQSTM1-201ENST00000360718 RAD54L2Q9Y4B4 1467 aa21.35■■□□□ 1.01
SQSTM1-201ENST00000360718 EEA1Q15075 1411 aa21.35■■□□□ 1.01
SQSTM1-201ENST00000360718 EHMT2Q96KQ7 1210 aa21.32■■□□□ 1
SQSTM1-201ENST00000360718 THOC2Q8NI27 1593 aaKnown RBP21.32■■□□□ 1
SQSTM1-201ENST00000360718 WDR62O43379 1518 aa21.31■■□□□ 1
SQSTM1-201ENST00000360718 CSRNP3Q8WYN3 585 aa21.31■■□□□ 1
SQSTM1-201ENST00000360718 CUX2O14529 1486 aa21.29■■□□□ 1
SQSTM1-201ENST00000360718 KIF27Q86VH2 1401 aa21.26■□□□□ 0.99
SQSTM1-201ENST00000360718 ABCA10Q8WWZ4 1543 aa21.25■□□□□ 0.99
SQSTM1-201ENST00000360718 WDR97A6NE52 1622 aa21.25■□□□□ 0.99
SQSTM1-201ENST00000360718 TARBP1Q13395 1621 aaKnown RBP21.23■□□□□ 0.99
SQSTM1-201ENST00000360718 KIF21BO75037 1637 aa21.15■□□□□ 0.98
SQSTM1-201ENST00000360718 TDRD9Q8NDG6 1382 aaKnown RBP21.15■□□□□ 0.98
SQSTM1-201ENST00000360718 IGF1RP08069 1367 aa21.14■□□□□ 0.97
SQSTM1-201ENST00000360718 ABCA5Q8WWZ7 1642 aa21.12■□□□□ 0.97
SQSTM1-201ENST00000360718 PRXQ9BXM0 1461 aa21.12■□□□□ 0.97
SQSTM1-201ENST00000360718 RAPGEF2Q9Y4G8 1499 aa21.11■□□□□ 0.97
SQSTM1-201ENST00000360718 GOLGA3Q08378 1498 aa21.1■□□□□ 0.97
SQSTM1-201ENST00000360718 IFT140Q96RY7 1462 aa21.09■□□□□ 0.97
SQSTM1-201ENST00000360718 ZNF608Q9ULD9 1512 aaPredicted RBP21.07■□□□□ 0.96
SQSTM1-201ENST00000360718 GAPVD1Q14C86 1478 aa21.06■□□□□ 0.96
SQSTM1-201ENST00000360718 AQRO60306 1485 aaKnown RBP eCLIP21.05■□□□□ 0.962e-8■■■■■ 28.3
SQSTM1-201ENST00000360718 ERICH3Q5RHP9 1530 aa21.03■□□□□ 0.96
SQSTM1-201ENST00000360718 UBTFP17480 764 aaKnown RBP21.01■□□□□ 0.95
SQSTM1-201ENST00000360718 CARMIL1Q5VZK9 1371 aa21.01■□□□□ 0.95
SQSTM1-201ENST00000360718 TNIKQ9UKE5 1360 aa21■□□□□ 0.95
SQSTM1-201ENST00000360718 PBRM1Q86U86 1689 aa20.99■□□□□ 0.95
SQSTM1-201ENST00000360718 EIF4G3O43432 1585 aaKnown RBP20.97■□□□□ 0.95
SQSTM1-201ENST00000360718 CUL7Q14999 1698 aa20.95■□□□□ 0.95
SQSTM1-201ENST00000360718 HRCP23327 699 aa20.95■□□□□ 0.94
SQSTM1-201ENST00000360718 CEP162Q5TB80 1403 aa20.91■□□□□ 0.94
SQSTM1-201ENST00000360718 GRIN2BQ13224 1484 aa20.9■□□□□ 0.94
SQSTM1-201ENST00000360718 ADAMTS12P58397 1594 aa20.86■□□□□ 0.93
SQSTM1-201ENST00000360718 PCGF6Q9BYE7 350 aa20.84■□□□□ 0.93
SQSTM1-201ENST00000360718 SNAPC4Q5SXM2 1469 aa20.83■□□□□ 0.92
SQSTM1-201ENST00000360718 FHAD1B1AJZ9 1412 aa20.81■□□□□ 0.92
SQSTM1-201ENST00000360718 RANGAP1P46060 587 aaPredicted RBP20.79■□□□□ 0.92
SQSTM1-201ENST00000360718 CLIP1P30622 1438 aa20.77■□□□□ 0.92
SQSTM1-201ENST00000360718 MAGI1Q96QZ7 1491 aaPredicted RBP20.74■□□□□ 0.91
SQSTM1-201ENST00000360718 CTTNBP2Q8WZ74 1663 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms