RNA–Protein interactions for RNA: ENST00000349299.7

H2AFV-203, Transcript of H2A histone family member V, humanhuman

TSL 2 BASIC

Gene H2AFV, Length 596 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
H2AFV-203ENST00000349299 AEBP2Q6ZN18 517 aaPredicted RBP26.25■■□□□ 1.79
H2AFV-203ENST00000349299 CHIC1Q5VXU3 224 aa25.18■■□□□ 1.62
H2AFV-203ENST00000349299 NISCHQ9Y2I1 1504 aa23.28■■□□□ 1.32
H2AFV-203ENST00000349299 SENP3Q9H4L4 574 aaPredicted RBP22.29■■□□□ 1.16
H2AFV-203ENST00000349299 PHF23Q9BUL5 403 aaPredicted RBP22.13■■□□□ 1.13
H2AFV-203ENST00000349299 FOXD1Q16676 465 aa20.77■□□□□ 0.92
H2AFV-203ENST00000349299 CCDC180Q9P1Z9 1646 aa20.72■□□□□ 0.91
H2AFV-203ENST00000349299 PLPPR3Q6T4P5 718 aa20.22■□□□□ 0.83
H2AFV-203ENST00000349299 ABCC9O60706 1549 aa19.93■□□□□ 0.78
H2AFV-203ENST00000349299 PPP6R1Q9UPN7 881 aa19.66■□□□□ 0.74
H2AFV-203ENST00000349299 ADRA2BP18089 450 aa19.59■□□□□ 0.73
H2AFV-203ENST00000349299 ZCCHC6Q5VYS8 1495 aaKnown RBP19.45■□□□□ 0.7
H2AFV-203ENST00000349299 PIAS4Q8N2W9 510 aaPredicted RBP19.44■□□□□ 0.7
H2AFV-203ENST00000349299 NACADO15069 1562 aa19.35■□□□□ 0.69
H2AFV-203ENST00000349299 RB1CC1Q8TDY2 1594 aa19.33■□□□□ 0.69
H2AFV-203ENST00000349299 DCAF1Q9Y4B6 1507 aa19.3■□□□□ 0.68
H2AFV-203ENST00000349299 MSH5O43196 834 aa19.29■□□□□ 0.68
H2AFV-203ENST00000349299 MYO15BQ96JP2 1530 aa19.29■□□□□ 0.68
H2AFV-203ENST00000349299 DCAF8L2P0C7V8 631 aa19.26■□□□□ 0.67
H2AFV-203ENST00000349299 UNC13AQ9UPW8 1703 aa19.04■□□□□ 0.64
H2AFV-203ENST00000349299 SCRIBQ14160 1630 aa18.86■□□□□ 0.61
H2AFV-203ENST00000349299 BICRAQ9NZM4 1560 aa18.74■□□□□ 0.59
H2AFV-203ENST00000349299 PABPN1Q86U42 306 aaKnown RBP eCLIP18.6■□□□□ 0.57
H2AFV-203ENST00000349299 SHROOM4Q9ULL8 1493 aa18.54■□□□□ 0.56
H2AFV-203ENST00000349299 POTEDQ86YR6 584 aa18.37■□□□□ 0.53
H2AFV-203ENST00000349299 EIF4G1Q04637 1599 aaKnown RBP18.21■□□□□ 0.51
H2AFV-203ENST00000349299 CC2D2AQ9P2K1 1620 aa18.1■□□□□ 0.49
H2AFV-203ENST00000349299 CECR2Q9BXF3 1484 aa18.09■□□□□ 0.49
H2AFV-203ENST00000349299 SMARCA4P51532 1647 aa18.08■□□□□ 0.48
H2AFV-203ENST00000349299 BAZ1AQ9NRL2 1556 aaPredicted RBP18.05■□□□□ 0.48
H2AFV-203ENST00000349299 DNAJC5BQ9UF47 199 aa18.03■□□□□ 0.48
H2AFV-203ENST00000349299 MROH2BQ7Z745 1585 aa17.95■□□□□ 0.46
H2AFV-203ENST00000349299 MAPK8IP2Q13387 824 aaPredicted RBP17.91■□□□□ 0.46
H2AFV-203ENST00000349299 SMARCA2P51531 1590 aa17.88■□□□□ 0.45
H2AFV-203ENST00000349299 PEG3Q9GZU2 1588 aa17.88■□□□□ 0.45
H2AFV-203ENST00000349299 SCAF1Q9H7N4 1312 aaKnown RBP17.87■□□□□ 0.45
H2AFV-203ENST00000349299 ATAD2BQ9ULI0 1458 aa17.84■□□□□ 0.45
H2AFV-203ENST00000349299 WIZO95785 1651 aa17.83■□□□□ 0.44
H2AFV-203ENST00000349299 HMGXB3Q12766 1538 aa17.79■□□□□ 0.44
H2AFV-203ENST00000349299 NCAPD3P42695 1498 aa17.79■□□□□ 0.44
H2AFV-203ENST00000349299 RSF1Q96T23 1441 aaPredicted RBP17.78■□□□□ 0.44
H2AFV-203ENST00000349299 PPP4R3CPQ6ZMV5 832 aa17.77■□□□□ 0.44
H2AFV-203ENST00000349299 DMRT2Q9Y5R5 561 aa17.74■□□□□ 0.43
H2AFV-203ENST00000349299 BAZ1BQ9UIG0 1483 aaKnown RBP17.73■□□□□ 0.43
H2AFV-203ENST00000349299 TOP2AP11388 1531 aaKnown RBP17.62■□□□□ 0.41
H2AFV-203ENST00000349299 SUPT5HO00267 1087 aaKnown RBP17.45■□□□□ 0.38
H2AFV-203ENST00000349299 CNKSR2Q8WXI2 1034 aa17.37■□□□□ 0.37
H2AFV-203ENST00000349299 CCDC88BA6NC98 1476 aa17.37■□□□□ 0.37
H2AFV-203ENST00000349299 LAMC3Q9Y6N6 1575 aa17.36■□□□□ 0.37
H2AFV-203ENST00000349299 PRDM2Q13029 1718 aa17.34■□□□□ 0.37
H2AFV-203ENST00000349299 NESP48681 1621 aa17.32■□□□□ 0.36
H2AFV-203ENST00000349299 CADPSQ9ULU8 1353 aa17.27■□□□□ 0.35
H2AFV-203ENST00000349299 KIF21AQ7Z4S6 1674 aa17.25■□□□□ 0.35
H2AFV-203ENST00000349299 CFTRP13569 1480 aa17.24■□□□□ 0.35
H2AFV-203ENST00000349299 HOXD11P31277 338 aaPredicted RBP17.22■□□□□ 0.35
H2AFV-203ENST00000349299 ERCC6Q03468 1493 aa17.17■□□□□ 0.34
H2AFV-203ENST00000349299 PDS5BQ9NTI5 1447 aa17.16■□□□□ 0.34
H2AFV-203ENST00000349299 RNF216Q9NWF9 866 aaPredicted RBP17.15■□□□□ 0.34
H2AFV-203ENST00000349299 NCBP3Q53F19 620 aaKnown RBP17.13■□□□□ 0.33
H2AFV-203ENST00000349299 FANCD2Q9BXW9 1451 aa17.1■□□□□ 0.33
H2AFV-203ENST00000349299 THOC2Q8NI27 1593 aaKnown RBP17.09■□□□□ 0.33
H2AFV-203ENST00000349299 CEP164Q9UPV0 1460 aa17.08■□□□□ 0.32
H2AFV-203ENST00000349299 MRC2Q9UBG0 1479 aa17■□□□□ 0.31
H2AFV-203ENST00000349299 WDR62O43379 1518 aa16.96■□□□□ 0.31
H2AFV-203ENST00000349299 NPM3O75607 178 aaKnown RBP16.94■□□□□ 0.3
H2AFV-203ENST00000349299 URB2Q14146 1524 aaKnown RBP16.94■□□□□ 0.3
H2AFV-203ENST00000349299 CUX2O14529 1486 aa16.93■□□□□ 0.3
H2AFV-203ENST00000349299 DCAF8L1A6NGE4 600 aa16.92■□□□□ 0.3
H2AFV-203ENST00000349299 DNMBPQ6XZF7 1577 aa16.9■□□□□ 0.3
H2AFV-203ENST00000349299 ABCC8Q09428 1581 aa16.88■□□□□ 0.29
H2AFV-203ENST00000349299 TOPBP1Q92547 1522 aa16.87■□□□□ 0.29
H2AFV-203ENST00000349299 KCNA4P22459 653 aa16.87■□□□□ 0.29
H2AFV-203ENST00000349299 CUX1P39880 1505 aa16.83■□□□□ 0.28
H2AFV-203ENST00000349299 BIVM-ERCC5R4GMW8 1640 aa16.82■□□□□ 0.28
H2AFV-203ENST00000349299 TOP2BQ02880 1626 aa16.78■□□□□ 0.28
H2AFV-203ENST00000349299 SYNJ1O43426 1573 aa16.78■□□□□ 0.28
H2AFV-203ENST00000349299 WRNQ14191 1432 aaPredicted RBP eCLIP16.77■□□□□ 0.27
H2AFV-203ENST00000349299 POLA1P09884 1462 aaPredicted RBP16.73■□□□□ 0.27
H2AFV-203ENST00000349299 FGD5Q6ZNL6 1462 aa16.73■□□□□ 0.27
H2AFV-203ENST00000349299 TARBP1Q13395 1621 aaKnown RBP16.72■□□□□ 0.27
H2AFV-203ENST00000349299 WDR97A6NE52 1622 aa16.7■□□□□ 0.26
H2AFV-203ENST00000349299 IFT140Q96RY7 1462 aa16.7■□□□□ 0.26
H2AFV-203ENST00000349299 RAD54L2Q9Y4B4 1467 aa16.64■□□□□ 0.25
H2AFV-203ENST00000349299 SOGA1O94964 1423 aa16.63■□□□□ 0.25
H2AFV-203ENST00000349299 EIF4G3O43432 1585 aaKnown RBP16.62■□□□□ 0.25
H2AFV-203ENST00000349299 ZNF608Q9ULD9 1512 aaPredicted RBP16.6■□□□□ 0.25
H2AFV-203ENST00000349299 ABCA10Q8WWZ4 1543 aa16.58■□□□□ 0.24
H2AFV-203ENST00000349299 PBRM1Q86U86 1689 aa16.57■□□□□ 0.24
H2AFV-203ENST00000349299 ABCA5Q8WWZ7 1642 aa16.56■□□□□ 0.24
H2AFV-203ENST00000349299 RNF39Q9H2S5 420 aa16.52■□□□□ 0.24
H2AFV-203ENST00000349299 AQRO60306 1485 aaKnown RBP eCLIP16.51■□□□□ 0.232e-7■■■■■ 32.8
H2AFV-203ENST00000349299 TDRD9Q8NDG6 1382 aaKnown RBP16.5■□□□□ 0.23
H2AFV-203ENST00000349299 GAPVD1Q14C86 1478 aa16.48■□□□□ 0.23
H2AFV-203ENST00000349299 TRIM41Q8WV44 630 aa16.47■□□□□ 0.23
H2AFV-203ENST00000349299 GRIN2BQ13224 1484 aa16.44■□□□□ 0.22
H2AFV-203ENST00000349299 CHD1O14646 1710 aa16.43■□□□□ 0.22
H2AFV-203ENST00000349299 ERICH3Q5RHP9 1530 aa16.4■□□□□ 0.22
H2AFV-203ENST00000349299 SNAPC4Q5SXM2 1469 aa16.4■□□□□ 0.22
H2AFV-203ENST00000349299 KIF27Q86VH2 1401 aa16.39■□□□□ 0.21
H2AFV-203ENST00000349299 MAGI1Q96QZ7 1491 aaPredicted RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms