RNA–Protein interactions for RNA: ENST00000398741.5

PRAME-201, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRAME, Length 2,202 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-201ENST00000398741 NISCHQ9Y2I1 1504 aa26.99■■□□□ 1.91
PRAME-201ENST00000398741 CCDC180Q9P1Z9 1646 aa23.54■■□□□ 1.36
PRAME-201ENST00000398741 SHROOM4Q9ULL8 1493 aa23.02■■□□□ 1.28
PRAME-201ENST00000398741 ZCCHC6Q5VYS8 1495 aaKnown RBP22.84■■□□□ 1.25
PRAME-201ENST00000398741 SUPT5HO00267 1087 aaKnown RBP22.62■■□□□ 1.21
PRAME-201ENST00000398741 DCAF8L2P0C7V8 631 aa22.37■■□□□ 1.17
PRAME-201ENST00000398741 ABCC9O60706 1549 aa22.36■■□□□ 1.17
PRAME-201ENST00000398741 DCAF1Q9Y4B6 1507 aa22.27■■□□□ 1.16
PRAME-201ENST00000398741 MYO15BQ96JP2 1530 aa22.03■■□□□ 1.12
PRAME-201ENST00000398741 CHIC1Q5VXU3 224 aa22.02■■□□□ 1.11
PRAME-201ENST00000398741 NACADO15069 1562 aa21.93■■□□□ 1.1
PRAME-201ENST00000398741 RB1CC1Q8TDY2 1594 aa21.76■■□□□ 1.07
PRAME-201ENST00000398741 SCRIBQ14160 1630 aa21.66■■□□□ 1.06
PRAME-201ENST00000398741 HRCP23327 699 aa21.45■■□□□ 1.03
PRAME-201ENST00000398741 UNC13AQ9UPW8 1703 aa21.43■■□□□ 1.02
PRAME-201ENST00000398741 PCGF6Q9BYE7 350 aa21.4■■□□□ 1.02
PRAME-201ENST00000398741 RSF1Q96T23 1441 aaPredicted RBP21.37■■□□□ 1.01
PRAME-201ENST00000398741 LOC105371045A0A1W2PR82 267 aa21.33■■□□□ 1
PRAME-201ENST00000398741 BICRAQ9NZM4 1560 aa21.18■□□□□ 0.98
PRAME-201ENST00000398741 TRIM41Q8WV44 630 aa21.11■□□□□ 0.97
PRAME-201ENST00000398741 PABPN1Q86U42 306 aaKnown RBP eCLIP21.08■□□□□ 0.96
PRAME-201ENST00000398741 TRIM26Q12899 539 aaPredicted RBP21.02■□□□□ 0.96
PRAME-201ENST00000398741 CECR2Q9BXF3 1484 aa21.01■□□□□ 0.95
PRAME-201ENST00000398741 MROH2BQ7Z745 1585 aa20.95■□□□□ 0.94
PRAME-201ENST00000398741 PPARGC1BQ86YN6 1023 aaKnown RBP20.93■□□□□ 0.94
PRAME-201ENST00000398741 FAM9AQ8IZU1 332 aaPredicted RBP20.9■□□□□ 0.94
PRAME-201ENST00000398741 WIZO95785 1651 aa20.83■□□□□ 0.93
PRAME-201ENST00000398741 BAZ1AQ9NRL2 1556 aaPredicted RBP20.8■□□□□ 0.92
PRAME-201ENST00000398741 SMARCA4P51532 1647 aa20.75■□□□□ 0.91
PRAME-201ENST00000398741 EHMT2Q96KQ7 1210 aa20.7■□□□□ 0.9
PRAME-201ENST00000398741 ZEB1P37275 1124 aaPredicted RBP20.65■□□□□ 0.9
PRAME-201ENST00000398741 EIF4G1Q04637 1599 aaKnown RBP20.58■□□□□ 0.89
PRAME-201ENST00000398741 TOP2AP11388 1531 aaKnown RBP20.57■□□□□ 0.88
PRAME-201ENST00000398741 PEG3Q9GZU2 1588 aa20.5■□□□□ 0.87
PRAME-201ENST00000398741 CCDC88BA6NC98 1476 aa20.45■□□□□ 0.86
PRAME-201ENST00000398741 ATAD2BQ9ULI0 1458 aa20.43■□□□□ 0.86
PRAME-201ENST00000398741 SMARCA2P51531 1590 aa20.42■□□□□ 0.86
PRAME-201ENST00000398741 ABCC8Q09428 1581 aa20.4■□□□□ 0.86
PRAME-201ENST00000398741 BAZ1BQ9UIG0 1483 aaKnown RBP20.28■□□□□ 0.84
PRAME-201ENST00000398741 NCAPD3P42695 1498 aa20.25■□□□□ 0.83
PRAME-201ENST00000398741 CC2D2AQ9P2K1 1620 aa20.25■□□□□ 0.83
PRAME-201ENST00000398741 SOGA1O94964 1423 aa20.23■□□□□ 0.83
PRAME-201ENST00000398741 EEA1Q15075 1411 aa20.23■□□□□ 0.83
PRAME-201ENST00000398741 HMGXB3Q12766 1538 aa20.21■□□□□ 0.83
PRAME-201ENST00000398741 WRNQ14191 1432 aaPredicted RBP eCLIP20.2■□□□□ 0.82
PRAME-201ENST00000398741 CEP162Q5TB80 1403 aa20.2■□□□□ 0.82
PRAME-201ENST00000398741 TNIKQ9UKE5 1360 aa20.18■□□□□ 0.82
PRAME-201ENST00000398741 CSRNP3Q8WYN3 585 aa20.17■□□□□ 0.82
PRAME-201ENST00000398741 CCER1Q8TC90 406 aaPredicted RBP20.14■□□□□ 0.81
PRAME-201ENST00000398741 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.13■□□□□ 0.81
PRAME-201ENST00000398741 UBTFP17480 764 aaKnown RBP20.11■□□□□ 0.81
PRAME-201ENST00000398741 RUSC2Q8N2Y8 1516 aa20.09■□□□□ 0.81
PRAME-201ENST00000398741 GOLGA3Q08378 1498 aa20.07■□□□□ 0.8
PRAME-201ENST00000398741 TTBK1Q5TCY1 1321 aaPredicted RBP20.06■□□□□ 0.8
PRAME-201ENST00000398741 SYNJ1O43426 1573 aa19.96■□□□□ 0.79
PRAME-201ENST00000398741 CEP164Q9UPV0 1460 aa19.95■□□□□ 0.78
PRAME-201ENST00000398741 DNAJC5BQ9UF47 199 aa19.94■□□□□ 0.78
PRAME-201ENST00000398741 KIF21BO75037 1637 aa19.9■□□□□ 0.78
PRAME-201ENST00000398741 CLIP1P30622 1438 aa19.83■□□□□ 0.77
PRAME-201ENST00000398741 CFTRP13569 1480 aa19.79■□□□□ 0.76
PRAME-201ENST00000398741 SCAF1Q9H7N4 1312 aaKnown RBP19.76■□□□□ 0.75
PRAME-201ENST00000398741 VPS8Q8N3P4 1428 aa19.75■□□□□ 0.75
PRAME-201ENST00000398741 DIEXFQ68CQ4 756 aaKnown RBP19.75■□□□□ 0.75
PRAME-201ENST00000398741 RAPGEF2Q9Y4G8 1499 aa19.74■□□□□ 0.75
PRAME-201ENST00000398741 TOP2BQ02880 1626 aa19.73■□□□□ 0.75
PRAME-201ENST00000398741 APLP2Q06481 763 aa19.73■□□□□ 0.75
PRAME-201ENST00000398741 CADPSQ9ULU8 1353 aa19.72■□□□□ 0.75
PRAME-201ENST00000398741 PRDM2Q13029 1718 aa19.7■□□□□ 0.74
PRAME-201ENST00000398741 HNRNPUL2Q1KMD3 747 aaKnown RBP19.66■□□□□ 0.74
PRAME-201ENST00000398741 BIVM-ERCC5R4GMW8 1640 aa19.65■□□□□ 0.74
PRAME-201ENST00000398741 RANGAP1P46060 587 aaPredicted RBP19.65■□□□□ 0.74
PRAME-201ENST00000398741 NESP48681 1621 aa19.63■□□□□ 0.73
PRAME-201ENST00000398741 ACIN1Q9UKV3 1341 aaKnown RBP19.61■□□□□ 0.73
PRAME-201ENST00000398741 ZNF316A6NFI3 1004 aaPredicted RBP19.6■□□□□ 0.73
PRAME-201ENST00000398741 ERICH3Q5RHP9 1530 aa19.59■□□□□ 0.73
PRAME-201ENST00000398741 LAMC3Q9Y6N6 1575 aa19.58■□□□□ 0.72
PRAME-201ENST00000398741 CENPBP07199 599 aaPredicted RBP19.57■□□□□ 0.72
PRAME-201ENST00000398741 PRXQ9BXM0 1461 aa19.56■□□□□ 0.72
PRAME-201ENST00000398741 NEUROD1Q13562 356 aa19.54■□□□□ 0.72
PRAME-201ENST00000398741 PELP1Q8IZL8 1130 aaKnown RBP19.53■□□□□ 0.72
PRAME-201ENST00000398741 CUX1P39880 1505 aa19.51■□□□□ 0.71
PRAME-201ENST00000398741 FANCD2Q9BXW9 1451 aa19.51■□□□□ 0.71
PRAME-201ENST00000398741 KIF27Q86VH2 1401 aa19.5■□□□□ 0.71
PRAME-201ENST00000398741 ARAP1Q96P48 1450 aa19.47■□□□□ 0.71
PRAME-201ENST00000398741 KIF21AQ7Z4S6 1674 aa19.4■□□□□ 0.7
PRAME-201ENST00000398741 PDS5BQ9NTI5 1447 aa19.4■□□□□ 0.7
PRAME-201ENST00000398741 GTF3C3Q9Y5Q9 886 aa19.37■□□□□ 0.69
PRAME-201ENST00000398741 KANK4Q5T7N3 995 aaPredicted RBP19.36■□□□□ 0.69
PRAME-201ENST00000398741 CLSPNQ9HAW4 1339 aa19.34■□□□□ 0.69
PRAME-201ENST00000398741 DNMBPQ6XZF7 1577 aa19.32■□□□□ 0.68
PRAME-201ENST00000398741 URB2Q14146 1524 aaKnown RBP19.3■□□□□ 0.68
PRAME-201ENST00000398741 TOPBP1Q92547 1522 aa19.3■□□□□ 0.68
PRAME-201ENST00000398741 ARHGAP35Q9NRY4 1499 aa19.3■□□□□ 0.68
PRAME-201ENST00000398741 DHX57Q6P158 1386 aaKnown RBP19.29■□□□□ 0.68
PRAME-201ENST00000398741 RRBP1Q9P2E9 1410 aaKnown RBP19.29■□□□□ 0.68
PRAME-201ENST00000398741 CUX2O14529 1486 aa19.28■□□□□ 0.68
PRAME-201ENST00000398741 FGD5Q6ZNL6 1462 aa19.28■□□□□ 0.68
PRAME-201ENST00000398741 MIER1Q8N108 512 aa19.28■□□□□ 0.68
PRAME-201ENST00000398741 YTHDC1Q96MU7 727 aaKnown RBP19.28■□□□□ 0.68
PRAME-201ENST00000398741 IGF1RP08069 1367 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms