Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
COL4A1P02462 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
COL4A1P02462 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC31.71■■■□□ 2.67
COL4A1P02462 RPS2-210ENST00000530225 765 ntTSL 2 BASIC31.71■■■□□ 2.67
COL4A1P02462 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
COL4A1P02462 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
COL4A1P02462 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
COL4A1P02462 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.71■■■□□ 2.67
COL4A1P02462 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
COL4A1P02462 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC31.7■■■□□ 2.67
COL4A1P02462 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC31.7■■■□□ 2.67
COL4A1P02462 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC31.7■■■□□ 2.66
COL4A1P02462 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC31.7■■■□□ 2.66
COL4A1P02462 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
COL4A1P02462 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
COL4A1P02462 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
COL4A1P02462 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC31.69■■■□□ 2.66
COL4A1P02462 MIR219A2-201ENST00000608502 1504 ntBASIC31.69■■■□□ 2.66
COL4A1P02462 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC31.69■■■□□ 2.66
COL4A1P02462 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC31.68■■■□□ 2.66
COL4A1P02462 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
COL4A1P02462 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
COL4A1P02462 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
COL4A1P02462 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC31.65■■■□□ 2.66
COL4A1P02462 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC31.64■■■□□ 2.66
COL4A1P02462 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
COL4A1P02462 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC31.64■■■□□ 2.66
COL4A1P02462 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC31.64■■■□□ 2.66
COL4A1P02462 MED25-210ENST00000612854 801 ntTSL 5 BASIC31.64■■■□□ 2.66
COL4A1P02462 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
COL4A1P02462 MED25-214ENST00000622402 642 ntTSL 5 BASIC31.64■■■□□ 2.66
COL4A1P02462 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
COL4A1P02462 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
COL4A1P02462 NTF6A-201ENST00000591175 560 ntBASIC31.64■■■□□ 2.65
COL4A1P02462 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
COL4A1P02462 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
COL4A1P02462 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC31.62■■■□□ 2.65
COL4A1P02462 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC31.62■■■□□ 2.65
COL4A1P02462 AC092296.2-201ENST00000589470 999 ntBASIC31.62■■■□□ 2.65
COL4A1P02462 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
COL4A1P02462 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
COL4A1P02462 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC31.61■■■□□ 2.65
COL4A1P02462 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
COL4A1P02462 MEST-211ENST00000437945 1455 ntTSL 5 BASIC31.6■■■□□ 2.65
COL4A1P02462 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
COL4A1P02462 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
COL4A1P02462 AL157400.5-201ENST00000507624 621 ntBASIC31.59■■■□□ 2.65
COL4A1P02462 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
COL4A1P02462 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
COL4A1P02462 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC31.56■■■□□ 2.64
COL4A1P02462 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC31.56■■■□□ 2.64
COL4A1P02462 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.55■■■□□ 2.64
COL4A1P02462 U85056.1-201ENST00000616429 682 ntBASIC31.55■■■□□ 2.64
COL4A1P02462 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
COL4A1P02462 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC31.54■■■□□ 2.64
COL4A1P02462 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
COL4A1P02462 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL4A1P02462 AC100797.4-201ENST00000631653 1827 ntBASIC31.53■■■□□ 2.64
COL4A1P02462 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.53■■■□□ 2.64
COL4A1P02462 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC31.53■■■□□ 2.64
COL4A1P02462 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL4A1P02462 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL4A1P02462 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
COL4A1P02462 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC31.52■■■□□ 2.64
COL4A1P02462 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL4A1P02462 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC31.52■■■□□ 2.64
COL4A1P02462 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL4A1P02462 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC31.51■■■□□ 2.64
COL4A1P02462 MOB2-207ENST00000614710 705 ntTSL 5 BASIC31.51■■■□□ 2.64
COL4A1P02462 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
COL4A1P02462 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
COL4A1P02462 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
COL4A1P02462 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
COL4A1P02462 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.5■■■□□ 2.63
COL4A1P02462 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
COL4A1P02462 AC012354.3-201ENST00000623734 483 ntBASIC31.49■■■□□ 2.63
COL4A1P02462 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
COL4A1P02462 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
COL4A1P02462 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC31.48■■■□□ 2.63
COL4A1P02462 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC31.48■■■□□ 2.63
COL4A1P02462 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC31.48■■■□□ 2.63
COL4A1P02462 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.48■■■□□ 2.63
COL4A1P02462 HYI-213ENST00000583037 1322 ntTSL 5 BASIC31.48■■■□□ 2.63
COL4A1P02462 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC31.48■■■□□ 2.63
COL4A1P02462 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC31.47■■■□□ 2.63
COL4A1P02462 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC31.47■■■□□ 2.63
COL4A1P02462 AC018358.1-201ENST00000631079 1402 ntBASIC31.47■■■□□ 2.63
COL4A1P02462 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL4A1P02462 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL4A1P02462 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL4A1P02462 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
COL4A1P02462 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC31.44■■■□□ 2.62
COL4A1P02462 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC31.44■■■□□ 2.62
COL4A1P02462 GFER-205ENST00000569451 517 ntTSL 5 BASIC31.44■■■□□ 2.62
COL4A1P02462 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
COL4A1P02462 KRT18P60-201ENST00000312876 1297 ntBASIC31.43■■■□□ 2.62
COL4A1P02462 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
COL4A1P02462 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC31.43■■■□□ 2.62
COL4A1P02462 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC31.42■■■□□ 2.62
COL4A1P02462 HES4-202ENST00000428771 1040 ntTSL 2 BASIC31.42■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms