Protein–RNA interactions for Protein: O60341

KDM1A, Lysine-specific histone demethylase 1A, humanhuman

Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM1AO60341 MIR3648-1-201ENST00000615959 180 ntBASIC24.8■■□□□ 1.56
KDM1AO60341 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.8■■□□□ 1.56
KDM1AO60341 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
KDM1AO60341 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC24.79■■□□□ 1.56
KDM1AO60341 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC24.79■■□□□ 1.56
KDM1AO60341 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.79■■□□□ 1.56
KDM1AO60341 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
KDM1AO60341 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
KDM1AO60341 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
KDM1AO60341 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
KDM1AO60341 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC24.77■■□□□ 1.56
KDM1AO60341 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC24.77■■□□□ 1.56
KDM1AO60341 HES6-205ENST00000409356 528 ntTSL 2 BASIC24.77■■□□□ 1.56
KDM1AO60341 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC24.77■■□□□ 1.56
KDM1AO60341 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC24.77■■□□□ 1.56
KDM1AO60341 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
KDM1AO60341 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24.76■■□□□ 1.55
KDM1AO60341 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
KDM1AO60341 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC24.76■■□□□ 1.55
KDM1AO60341 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.76■■□□□ 1.55
KDM1AO60341 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC24.76■■□□□ 1.55
KDM1AO60341 CR559946.2-201ENST00000623684 991 ntBASIC24.76■■□□□ 1.55
KDM1AO60341 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
KDM1AO60341 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC24.76■■□□□ 1.55
KDM1AO60341 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
KDM1AO60341 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC24.75■■□□□ 1.55
KDM1AO60341 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
KDM1AO60341 AC110285.7-201ENST00000624417 1536 ntBASIC24.75■■□□□ 1.55
KDM1AO60341 ABCB10P3-201ENST00000561950 2166 ntBASIC24.74■■□□□ 1.55
KDM1AO60341 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
KDM1AO60341 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.73■■□□□ 1.55
KDM1AO60341 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
KDM1AO60341 AC016575.1-201ENST00000607026 382 ntBASIC24.73■■□□□ 1.55
KDM1AO60341 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
KDM1AO60341 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC24.73■■□□□ 1.55
KDM1AO60341 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
KDM1AO60341 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
KDM1AO60341 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
KDM1AO60341 HLA-V-202ENST00000446817 847 ntBASIC24.72■■□□□ 1.55
KDM1AO60341 AC100797.4-201ENST00000631653 1827 ntBASIC24.72■■□□□ 1.55
KDM1AO60341 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
KDM1AO60341 AC008813.1-201ENST00000536597 885 ntBASIC24.71■■□□□ 1.55
KDM1AO60341 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC24.7■■□□□ 1.55
KDM1AO60341 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.54
KDM1AO60341 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KDM1AO60341 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KDM1AO60341 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC24.7■■□□□ 1.54
KDM1AO60341 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
KDM1AO60341 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
KDM1AO60341 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
KDM1AO60341 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
KDM1AO60341 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
KDM1AO60341 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
KDM1AO60341 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC24.68■■□□□ 1.54
KDM1AO60341 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
KDM1AO60341 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
KDM1AO60341 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
KDM1AO60341 MIR639-201ENST00000384974 98 ntBASIC24.67■■□□□ 1.54
KDM1AO60341 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
KDM1AO60341 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
KDM1AO60341 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
KDM1AO60341 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC24.65■■□□□ 1.54
KDM1AO60341 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
KDM1AO60341 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
KDM1AO60341 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
KDM1AO60341 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
KDM1AO60341 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
KDM1AO60341 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
KDM1AO60341 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
KDM1AO60341 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
KDM1AO60341 MBP-237ENST00000579129 1052 ntTSL 5 BASIC24.63■■□□□ 1.53
KDM1AO60341 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
KDM1AO60341 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
KDM1AO60341 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
KDM1AO60341 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.63■■□□□ 1.53
KDM1AO60341 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
KDM1AO60341 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
KDM1AO60341 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.62■■□□□ 1.53
KDM1AO60341 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC24.62■■□□□ 1.53
KDM1AO60341 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
KDM1AO60341 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC24.61■■□□□ 1.53
KDM1AO60341 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
KDM1AO60341 RPS2-210ENST00000530225 765 ntTSL 2 BASIC24.61■■□□□ 1.53
KDM1AO60341 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC24.61■■□□□ 1.53
KDM1AO60341 AP002414.2-202ENST00000590929 1450 ntBASIC24.61■■□□□ 1.53
KDM1AO60341 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
KDM1AO60341 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
KDM1AO60341 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
KDM1AO60341 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
KDM1AO60341 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
KDM1AO60341 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC24.6■■□□□ 1.53
KDM1AO60341 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
KDM1AO60341 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
KDM1AO60341 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC24.59■■□□□ 1.53
KDM1AO60341 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
KDM1AO60341 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.59■■□□□ 1.53
KDM1AO60341 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC24.59■■□□□ 1.53
KDM1AO60341 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
KDM1AO60341 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.53
KDM1AO60341 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC24.58■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms