Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV40A0A0B4J280 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV40A0A0B4J280 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV40A0A0B4J280 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV40A0A0B4J280 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRAV40A0A0B4J280 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRAV40A0A0B4J280 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.79■□□□□ 0.92
TRAV40A0A0B4J280 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.79■□□□□ 0.92
TRAV40A0A0B4J280 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.79■□□□□ 0.92
TRAV40A0A0B4J280 GPX1-201ENST00000419349 1106 ntBASIC20.78■□□□□ 0.92
TRAV40A0A0B4J280 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC20.78■□□□□ 0.92
TRAV40A0A0B4J280 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRAV40A0A0B4J280 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRAV40A0A0B4J280 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
TRAV40A0A0B4J280 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRAV40A0A0B4J280 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC20.76■□□□□ 0.91
TRAV40A0A0B4J280 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
TRAV40A0A0B4J280 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAV40A0A0B4J280 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRAV40A0A0B4J280 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC20.75■□□□□ 0.91
TRAV40A0A0B4J280 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.75■□□□□ 0.91
TRAV40A0A0B4J280 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.75■□□□□ 0.91
TRAV40A0A0B4J280 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
TRAV40A0A0B4J280 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.74■□□□□ 0.91
TRAV40A0A0B4J280 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
TRAV40A0A0B4J280 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAV40A0A0B4J280 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRAV40A0A0B4J280 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC20.74■□□□□ 0.91
TRAV40A0A0B4J280 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.74■□□□□ 0.91
TRAV40A0A0B4J280 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRAV40A0A0B4J280 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAV40A0A0B4J280 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC20.73■□□□□ 0.91
TRAV40A0A0B4J280 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAV40A0A0B4J280 RARRES2P2-201ENST00000394842 485 ntBASIC20.73■□□□□ 0.91
TRAV40A0A0B4J280 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TRAV40A0A0B4J280 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAV40A0A0B4J280 RPS2-210ENST00000530225 765 ntTSL 2 BASIC20.72■□□□□ 0.91
TRAV40A0A0B4J280 AP004833.2-201ENST00000532228 1454 ntBASIC20.72■□□□□ 0.91
TRAV40A0A0B4J280 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAV40A0A0B4J280 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRAV40A0A0B4J280 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRAV40A0A0B4J280 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRAV40A0A0B4J280 AC148477.6-201ENST00000623746 465 ntBASIC20.71■□□□□ 0.91
TRAV40A0A0B4J280 AC022413.1-201ENST00000624602 984 ntBASIC20.71■□□□□ 0.91
TRAV40A0A0B4J280 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRAV40A0A0B4J280 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRAV40A0A0B4J280 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.7■□□□□ 0.9
TRAV40A0A0B4J280 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRAV40A0A0B4J280 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRAV40A0A0B4J280 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRAV40A0A0B4J280 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRAV40A0A0B4J280 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRAV40A0A0B4J280 MIR219A2-201ENST00000608502 1504 ntBASIC20.68■□□□□ 0.9
TRAV40A0A0B4J280 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRAV40A0A0B4J280 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRAV40A0A0B4J280 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRAV40A0A0B4J280 AC100797.4-201ENST00000631653 1827 ntBASIC20.68■□□□□ 0.9
TRAV40A0A0B4J280 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC20.68■□□□□ 0.9
TRAV40A0A0B4J280 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
TRAV40A0A0B4J280 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
TRAV40A0A0B4J280 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
TRAV40A0A0B4J280 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRAV40A0A0B4J280 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRAV40A0A0B4J280 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRAV40A0A0B4J280 RNF126P1-201ENST00000567452 1320 ntBASIC20.66■□□□□ 0.9
TRAV40A0A0B4J280 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.66■□□□□ 0.9
TRAV40A0A0B4J280 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV40A0A0B4J280 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.65■□□□□ 0.9
TRAV40A0A0B4J280 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.65■□□□□ 0.9
TRAV40A0A0B4J280 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
TRAV40A0A0B4J280 ABHD17AP5-201ENST00000580133 923 ntBASIC20.64■□□□□ 0.89
TRAV40A0A0B4J280 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.64■□□□□ 0.89
TRAV40A0A0B4J280 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC20.63■□□□□ 0.89
TRAV40A0A0B4J280 ABCB10P1-201ENST00000614297 2181 ntBASIC20.63■□□□□ 0.89
TRAV40A0A0B4J280 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.63■□□□□ 0.89
TRAV40A0A0B4J280 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRAV40A0A0B4J280 AL139393.2-201ENST00000608721 2025 ntBASIC20.62■□□□□ 0.89
TRAV40A0A0B4J280 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC20.62■□□□□ 0.89
TRAV40A0A0B4J280 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.62■□□□□ 0.89
TRAV40A0A0B4J280 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.62■□□□□ 0.89
TRAV40A0A0B4J280 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV40A0A0B4J280 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV40A0A0B4J280 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV40A0A0B4J280 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV40A0A0B4J280 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV40A0A0B4J280 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV40A0A0B4J280 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
TRAV40A0A0B4J280 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC20.61■□□□□ 0.89
TRAV40A0A0B4J280 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.61■□□□□ 0.89
TRAV40A0A0B4J280 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
TRAV40A0A0B4J280 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV40A0A0B4J280 HES4-202ENST00000428771 1040 ntTSL 2 BASIC20.6■□□□□ 0.89
TRAV40A0A0B4J280 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRAV40A0A0B4J280 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
TRAV40A0A0B4J280 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.59■□□□□ 0.89
TRAV40A0A0B4J280 AC060814.1-201ENST00000554326 538 ntBASIC20.59■□□□□ 0.89
TRAV40A0A0B4J280 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRAV40A0A0B4J280 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC20.58■□□□□ 0.89
TRAV40A0A0B4J280 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRAV40A0A0B4J280 ABCB10P3-201ENST00000561950 2166 ntBASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms