Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC32.53■■■□□ 2.8
CCDC88AQ3V6T2 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC32.52■■■□□ 2.8
CCDC88AQ3V6T2 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
CCDC88AQ3V6T2 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
CCDC88AQ3V6T2 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC32.49■■■□□ 2.79
CCDC88AQ3V6T2 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC32.49■■■□□ 2.79
CCDC88AQ3V6T2 CEP120-209ENST00000515110 606 ntTSL 3 BASIC32.47■■■□□ 2.79
CCDC88AQ3V6T2 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
CCDC88AQ3V6T2 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
CCDC88AQ3V6T2 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC32.46■■■□□ 2.79
CCDC88AQ3V6T2 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC32.45■■■□□ 2.79
CCDC88AQ3V6T2 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC32.44■■■□□ 2.78
CCDC88AQ3V6T2 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
CCDC88AQ3V6T2 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
CCDC88AQ3V6T2 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
CCDC88AQ3V6T2 RNF126P1-201ENST00000567452 1320 ntBASIC32.43■■■□□ 2.78
CCDC88AQ3V6T2 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC32.42■■■□□ 2.78
CCDC88AQ3V6T2 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC88AQ3V6T2 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
CCDC88AQ3V6T2 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
CCDC88AQ3V6T2 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
CCDC88AQ3V6T2 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
CCDC88AQ3V6T2 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC32.38■■■□□ 2.77
CCDC88AQ3V6T2 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC32.38■■■□□ 2.77
CCDC88AQ3V6T2 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
CCDC88AQ3V6T2 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC32.38■■■□□ 2.77
CCDC88AQ3V6T2 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
CCDC88AQ3V6T2 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
CCDC88AQ3V6T2 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC32.36■■■□□ 2.77
CCDC88AQ3V6T2 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC32.36■■■□□ 2.77
CCDC88AQ3V6T2 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC32.36■■■□□ 2.77
CCDC88AQ3V6T2 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC32.35■■■□□ 2.77
CCDC88AQ3V6T2 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC32.35■■■□□ 2.77
CCDC88AQ3V6T2 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
CCDC88AQ3V6T2 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC32.34■■■□□ 2.77
CCDC88AQ3V6T2 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC32.34■■■□□ 2.77
CCDC88AQ3V6T2 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC32.33■■■□□ 2.77
CCDC88AQ3V6T2 LINC00273-201ENST00000539813 1452 ntBASIC32.33■■■□□ 2.77
CCDC88AQ3V6T2 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC32.32■■■□□ 2.76
CCDC88AQ3V6T2 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC32.31■■■□□ 2.76
CCDC88AQ3V6T2 AC008813.1-201ENST00000536597 885 ntBASIC32.31■■■□□ 2.76
CCDC88AQ3V6T2 AL033527.3-201ENST00000566366 1196 ntBASIC32.29■■■□□ 2.76
CCDC88AQ3V6T2 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC32.29■■■□□ 2.76
CCDC88AQ3V6T2 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC32.28■■■□□ 2.76
CCDC88AQ3V6T2 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CCDC88AQ3V6T2 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
CCDC88AQ3V6T2 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC32.26■■■□□ 2.76
CCDC88AQ3V6T2 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
CCDC88AQ3V6T2 GFER-205ENST00000569451 517 ntTSL 5 BASIC32.26■■■□□ 2.75
CCDC88AQ3V6T2 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC32.25■■■□□ 2.75
CCDC88AQ3V6T2 AC022413.1-201ENST00000624602 984 ntBASIC32.25■■■□□ 2.75
CCDC88AQ3V6T2 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
CCDC88AQ3V6T2 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
CCDC88AQ3V6T2 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
CCDC88AQ3V6T2 HES4-202ENST00000428771 1040 ntTSL 2 BASIC32.21■■■□□ 2.75
CCDC88AQ3V6T2 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC32.2■■■□□ 2.75
CCDC88AQ3V6T2 AC018358.1-201ENST00000631079 1402 ntBASIC32.2■■■□□ 2.74
CCDC88AQ3V6T2 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC32.19■■■□□ 2.74
CCDC88AQ3V6T2 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CCDC88AQ3V6T2 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CCDC88AQ3V6T2 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CCDC88AQ3V6T2 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC32.16■■■□□ 2.74
CCDC88AQ3V6T2 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
CCDC88AQ3V6T2 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
CCDC88AQ3V6T2 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC32.15■■■□□ 2.74
CCDC88AQ3V6T2 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
CCDC88AQ3V6T2 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC32.14■■■□□ 2.74
CCDC88AQ3V6T2 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC32.14■■■□□ 2.74
CCDC88AQ3V6T2 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
CCDC88AQ3V6T2 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
CCDC88AQ3V6T2 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
CCDC88AQ3V6T2 HYI-213ENST00000583037 1322 ntTSL 5 BASIC32.12■■■□□ 2.73
CCDC88AQ3V6T2 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
CCDC88AQ3V6T2 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC32.12■■■□□ 2.73
CCDC88AQ3V6T2 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
CCDC88AQ3V6T2 KRT18P60-201ENST00000312876 1297 ntBASIC32.1■■■□□ 2.73
CCDC88AQ3V6T2 AL161658.1-201ENST00000623641 1967 ntBASIC32.09■■■□□ 2.73
CCDC88AQ3V6T2 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC32.09■■■□□ 2.73
CCDC88AQ3V6T2 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
CCDC88AQ3V6T2 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC32.09■■■□□ 2.73
CCDC88AQ3V6T2 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC32.09■■■□□ 2.73
CCDC88AQ3V6T2 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC32.08■■■□□ 2.73
CCDC88AQ3V6T2 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
CCDC88AQ3V6T2 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC32.08■■■□□ 2.73
CCDC88AQ3V6T2 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC32.08■■■□□ 2.73
CCDC88AQ3V6T2 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC32.08■■■□□ 2.73
CCDC88AQ3V6T2 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
CCDC88AQ3V6T2 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
CCDC88AQ3V6T2 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
CCDC88AQ3V6T2 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
CCDC88AQ3V6T2 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
CCDC88AQ3V6T2 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC32.06■■■□□ 2.72
CCDC88AQ3V6T2 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
CCDC88AQ3V6T2 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
CCDC88AQ3V6T2 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
CCDC88AQ3V6T2 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC32.05■■■□□ 2.72
CCDC88AQ3V6T2 AC060814.1-201ENST00000554326 538 ntBASIC32.05■■■□□ 2.72
CCDC88AQ3V6T2 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC32.05■■■□□ 2.72
CCDC88AQ3V6T2 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
CCDC88AQ3V6T2 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC32.05■■■□□ 2.72
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms