Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
RNF4P78317 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC24.09■■□□□ 1.45
RNF4P78317 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
RNF4P78317 MIR7108-201ENST00000614319 87 ntBASIC24.09■■□□□ 1.45
RNF4P78317 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
RNF4P78317 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
RNF4P78317 ABCB10P1-201ENST00000614297 2181 ntBASIC24.08■■□□□ 1.45
RNF4P78317 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC24.08■■□□□ 1.45
RNF4P78317 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
RNF4P78317 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
RNF4P78317 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC24.07■■□□□ 1.44
RNF4P78317 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
RNF4P78317 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
RNF4P78317 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.06■■□□□ 1.44
RNF4P78317 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.05■■□□□ 1.44
RNF4P78317 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC24.05■■□□□ 1.44
RNF4P78317 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.05■■□□□ 1.44
RNF4P78317 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC24.05■■□□□ 1.44
RNF4P78317 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC24.04■■□□□ 1.44
RNF4P78317 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.04■■□□□ 1.44
RNF4P78317 LINC00273-201ENST00000539813 1452 ntBASIC24.04■■□□□ 1.44
RNF4P78317 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
RNF4P78317 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
RNF4P78317 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
RNF4P78317 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
RNF4P78317 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
RNF4P78317 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RNF4P78317 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC24■■□□□ 1.43
RNF4P78317 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RNF4P78317 LINC01971-201ENST00000617888 1048 ntBASIC24■■□□□ 1.43
RNF4P78317 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RNF4P78317 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC24■■□□□ 1.43
RNF4P78317 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.99■■□□□ 1.43
RNF4P78317 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
RNF4P78317 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC23.98■■□□□ 1.43
RNF4P78317 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC23.98■■□□□ 1.43
RNF4P78317 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
RNF4P78317 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
RNF4P78317 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
RNF4P78317 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
RNF4P78317 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.97■■□□□ 1.43
RNF4P78317 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.97■■□□□ 1.43
RNF4P78317 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.97■■□□□ 1.43
RNF4P78317 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
RNF4P78317 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RNF4P78317 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC23.96■■□□□ 1.43
RNF4P78317 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
RNF4P78317 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
RNF4P78317 DUX4L11-201ENST00000611504 1267 ntBASIC23.95■■□□□ 1.42
RNF4P78317 DUX4L12-201ENST00000614593 1267 ntBASIC23.95■■□□□ 1.42
RNF4P78317 DUX4L14-201ENST00000621227 1267 ntBASIC23.95■■□□□ 1.42
RNF4P78317 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
RNF4P78317 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
RNF4P78317 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
RNF4P78317 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RNF4P78317 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RNF4P78317 AC135983.2-203ENST00000454486 1613 ntBASIC23.93■■□□□ 1.42
RNF4P78317 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
RNF4P78317 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
RNF4P78317 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
RNF4P78317 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
RNF4P78317 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
RNF4P78317 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
RNF4P78317 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.92■■□□□ 1.42
RNF4P78317 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
RNF4P78317 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
RNF4P78317 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
RNF4P78317 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RNF4P78317 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
RNF4P78317 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
RNF4P78317 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.9■■□□□ 1.42
RNF4P78317 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC23.9■■□□□ 1.42
RNF4P78317 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RNF4P78317 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
RNF4P78317 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
RNF4P78317 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
RNF4P78317 WHAMMP2-203ENST00000563942 1603 ntBASIC23.89■■□□□ 1.42
RNF4P78317 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.89■■□□□ 1.41
RNF4P78317 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC23.89■■□□□ 1.41
RNF4P78317 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.88■■□□□ 1.41
RNF4P78317 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
RNF4P78317 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
RNF4P78317 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RNF4P78317 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
RNF4P78317 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.86■■□□□ 1.41
RNF4P78317 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.86■■□□□ 1.41
RNF4P78317 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
RNF4P78317 AL139393.2-201ENST00000608721 2025 ntBASIC23.85■■□□□ 1.41
RNF4P78317 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L13-201ENST00000554103 1267 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L15-201ENST00000611059 1267 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L23-201ENST00000615195 1269 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L24-201ENST00000617576 1269 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L22-201ENST00000618238 1269 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L20-201ENST00000619712 1269 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L21-201ENST00000622058 1269 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L10-201ENST00000622460 1267 ntBASIC23.85■■□□□ 1.41
RNF4P78317 DUX4L25-201ENST00000624915 1269 ntBASIC23.85■■□□□ 1.41
RNF4P78317 AP004833.2-201ENST00000532228 1454 ntBASIC23.85■■□□□ 1.41
RNF4P78317 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms