Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA3P55318 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA3P55318 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
FOXA3P55318 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA3P55318 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA3P55318 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
FOXA3P55318 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA3P55318 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC19.33■□□□□ 0.69
FOXA3P55318 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA3P55318 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA3P55318 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA3P55318 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA3P55318 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA3P55318 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
FOXA3P55318 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA3P55318 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC19.32■□□□□ 0.68
FOXA3P55318 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC19.32■□□□□ 0.68
FOXA3P55318 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA3P55318 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA3P55318 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA3P55318 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
FOXA3P55318 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA3P55318 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA3P55318 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA3P55318 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC19.31■□□□□ 0.68
FOXA3P55318 BX255925.1-201ENST00000566954 1854 ntBASIC19.31■□□□□ 0.68
FOXA3P55318 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
FOXA3P55318 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
FOXA3P55318 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC19.3■□□□□ 0.68
FOXA3P55318 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA3P55318 SHF-208ENST00000560734 1731 ntTSL 3 BASIC19.29■□□□□ 0.68
FOXA3P55318 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA3P55318 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA3P55318 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA3P55318 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA3P55318 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA3P55318 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC19.28■□□□□ 0.68
FOXA3P55318 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA3P55318 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA3P55318 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA3P55318 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA3P55318 EBPL-203ENST00000378270 579 ntTSL 2 BASIC19.27■□□□□ 0.68
FOXA3P55318 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA3P55318 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA3P55318 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
FOXA3P55318 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC19.27■□□□□ 0.67
FOXA3P55318 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
FOXA3P55318 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
FOXA3P55318 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA3P55318 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC19.25■□□□□ 0.67
FOXA3P55318 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA3P55318 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC19.25■□□□□ 0.67
FOXA3P55318 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA3P55318 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA3P55318 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA3P55318 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXA3P55318 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA3P55318 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA3P55318 PROC-203ENST00000409048 1586 ntTSL 5 BASIC19.23■□□□□ 0.67
FOXA3P55318 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXA3P55318 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXA3P55318 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXA3P55318 AC006077.2-201ENST00000623591 457 ntBASIC19.21■□□□□ 0.67
FOXA3P55318 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC19.21■□□□□ 0.67
FOXA3P55318 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA3P55318 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXA3P55318 PKM-204ENST00000449901 2526 ntTSL 2 BASIC19.2■□□□□ 0.66
FOXA3P55318 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC19.2■□□□□ 0.66
FOXA3P55318 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA3P55318 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC19.19■□□□□ 0.66
FOXA3P55318 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC19.19■□□□□ 0.66
FOXA3P55318 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC19.19■□□□□ 0.66
FOXA3P55318 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA3P55318 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA3P55318 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA3P55318 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
FOXA3P55318 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA3P55318 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
FOXA3P55318 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA3P55318 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA3P55318 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
FOXA3P55318 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA3P55318 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC19.18■□□□□ 0.66
FOXA3P55318 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXA3P55318 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA3P55318 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA3P55318 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
FOXA3P55318 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA3P55318 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
FOXA3P55318 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA3P55318 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA3P55318 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA3P55318 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA3P55318 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
FOXA3P55318 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA3P55318 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA3P55318 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC19.16■□□□□ 0.66
FOXA3P55318 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC19.15■□□□□ 0.66
FOXA3P55318 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA3P55318 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms