Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.43■□□□□ 0.86
TRAV41A0A0B4J266 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV41A0A0B4J266 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV41A0A0B4J266 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV41A0A0B4J266 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV41A0A0B4J266 AC021231.2-201ENST00000594613 730 ntBASIC20.42■□□□□ 0.86
TRAV41A0A0B4J266 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV41A0A0B4J266 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV41A0A0B4J266 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
TRAV41A0A0B4J266 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV41A0A0B4J266 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV41A0A0B4J266 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
TRAV41A0A0B4J266 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.4■□□□□ 0.86
TRAV41A0A0B4J266 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.4■□□□□ 0.86
TRAV41A0A0B4J266 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.4■□□□□ 0.86
TRAV41A0A0B4J266 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV41A0A0B4J266 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
TRAV41A0A0B4J266 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
TRAV41A0A0B4J266 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV41A0A0B4J266 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV41A0A0B4J266 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV41A0A0B4J266 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
TRAV41A0A0B4J266 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV41A0A0B4J266 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV41A0A0B4J266 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV41A0A0B4J266 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC20.38■□□□□ 0.85
TRAV41A0A0B4J266 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.38■□□□□ 0.85
TRAV41A0A0B4J266 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV41A0A0B4J266 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
TRAV41A0A0B4J266 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV41A0A0B4J266 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV41A0A0B4J266 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
TRAV41A0A0B4J266 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV41A0A0B4J266 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV41A0A0B4J266 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV41A0A0B4J266 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
TRAV41A0A0B4J266 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV41A0A0B4J266 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV41A0A0B4J266 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV41A0A0B4J266 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV41A0A0B4J266 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV41A0A0B4J266 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV41A0A0B4J266 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
TRAV41A0A0B4J266 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.35■□□□□ 0.85
TRAV41A0A0B4J266 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
TRAV41A0A0B4J266 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV41A0A0B4J266 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV41A0A0B4J266 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV41A0A0B4J266 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV41A0A0B4J266 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV41A0A0B4J266 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV41A0A0B4J266 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV41A0A0B4J266 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV41A0A0B4J266 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
TRAV41A0A0B4J266 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV41A0A0B4J266 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV41A0A0B4J266 LINC00273-201ENST00000539813 1452 ntBASIC20.32■□□□□ 0.84
TRAV41A0A0B4J266 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
TRAV41A0A0B4J266 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV41A0A0B4J266 ABHD17AP4-201ENST00000411545 909 ntBASIC20.32■□□□□ 0.84
TRAV41A0A0B4J266 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC20.32■□□□□ 0.84
TRAV41A0A0B4J266 CALM3-209ENST00000597743 577 ntTSL 4 BASIC20.32■□□□□ 0.84
TRAV41A0A0B4J266 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.31■□□□□ 0.84
TRAV41A0A0B4J266 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV41A0A0B4J266 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.31■□□□□ 0.84
TRAV41A0A0B4J266 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV41A0A0B4J266 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
TRAV41A0A0B4J266 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV41A0A0B4J266 AL139393.2-201ENST00000608721 2025 ntBASIC20.29■□□□□ 0.84
TRAV41A0A0B4J266 ZNRF2P2-203ENST00000454624 420 ntBASIC20.29■□□□□ 0.84
TRAV41A0A0B4J266 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV41A0A0B4J266 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
TRAV41A0A0B4J266 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV41A0A0B4J266 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV41A0A0B4J266 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.28■□□□□ 0.84
TRAV41A0A0B4J266 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC20.28■□□□□ 0.84
TRAV41A0A0B4J266 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC20.28■□□□□ 0.84
TRAV41A0A0B4J266 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC20.27■□□□□ 0.84
TRAV41A0A0B4J266 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC20.27■□□□□ 0.84
TRAV41A0A0B4J266 AP004833.2-201ENST00000532228 1454 ntBASIC20.27■□□□□ 0.84
TRAV41A0A0B4J266 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.27■□□□□ 0.84
TRAV41A0A0B4J266 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV41A0A0B4J266 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
TRAV41A0A0B4J266 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC20.27■□□□□ 0.83
TRAV41A0A0B4J266 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC20.26■□□□□ 0.83
TRAV41A0A0B4J266 ABCB10P3-201ENST00000561950 2166 ntBASIC20.26■□□□□ 0.83
TRAV41A0A0B4J266 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV41A0A0B4J266 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV41A0A0B4J266 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.25■□□□□ 0.83
TRAV41A0A0B4J266 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV41A0A0B4J266 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TRAV41A0A0B4J266 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.24■□□□□ 0.83
TRAV41A0A0B4J266 AC135983.2-203ENST00000454486 1613 ntBASIC20.24■□□□□ 0.83
TRAV41A0A0B4J266 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
TRAV41A0A0B4J266 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
TRAV41A0A0B4J266 LINC01971-201ENST00000617888 1048 ntBASIC20.22■□□□□ 0.83
TRAV41A0A0B4J266 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV41A0A0B4J266 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV41A0A0B4J266 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV41A0A0B4J266 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.2■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms