Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 NRG1-221ENST00000614767 762 ntTSL 5 BASIC23.38■■□□□ 1.33
SEC61A2Q9H9S3 ABCB10P3-201ENST00000561950 2166 ntBASIC23.38■■□□□ 1.33
SEC61A2Q9H9S3 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SEC61A2Q9H9S3 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
SEC61A2Q9H9S3 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SEC61A2Q9H9S3 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SEC61A2Q9H9S3 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SEC61A2Q9H9S3 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SEC61A2Q9H9S3 AL162393.1-201ENST00000437852 946 ntBASIC23.36■■□□□ 1.33
SEC61A2Q9H9S3 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
SEC61A2Q9H9S3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SEC61A2Q9H9S3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
SEC61A2Q9H9S3 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SEC61A2Q9H9S3 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
SEC61A2Q9H9S3 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SEC61A2Q9H9S3 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SEC61A2Q9H9S3 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC23.34■■□□□ 1.33
SEC61A2Q9H9S3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC23.34■■□□□ 1.33
SEC61A2Q9H9S3 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
SEC61A2Q9H9S3 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
SEC61A2Q9H9S3 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC23.34■■□□□ 1.33
SEC61A2Q9H9S3 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC23.33■■□□□ 1.33
SEC61A2Q9H9S3 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SEC61A2Q9H9S3 RPS2P35-201ENST00000443417 897 ntBASIC23.33■■□□□ 1.33
SEC61A2Q9H9S3 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
SEC61A2Q9H9S3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
SEC61A2Q9H9S3 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SEC61A2Q9H9S3 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SEC61A2Q9H9S3 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.32■■□□□ 1.32
SEC61A2Q9H9S3 AC139426.1-201ENST00000568218 2529 ntBASIC23.32■■□□□ 1.32
SEC61A2Q9H9S3 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
SEC61A2Q9H9S3 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC23.31■■□□□ 1.32
SEC61A2Q9H9S3 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SEC61A2Q9H9S3 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC23.29■■□□□ 1.32
SEC61A2Q9H9S3 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC23.29■■□□□ 1.32
SEC61A2Q9H9S3 DUX4L28-201ENST00000623687 678 ntBASIC23.29■■□□□ 1.32
SEC61A2Q9H9S3 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SEC61A2Q9H9S3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
SEC61A2Q9H9S3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SEC61A2Q9H9S3 AP006261.1-201ENST00000584783 668 ntBASIC23.28■■□□□ 1.32
SEC61A2Q9H9S3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
SEC61A2Q9H9S3 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SEC61A2Q9H9S3 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
SEC61A2Q9H9S3 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
SEC61A2Q9H9S3 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
SEC61A2Q9H9S3 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SEC61A2Q9H9S3 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SEC61A2Q9H9S3 AC005559.1-201ENST00000589661 871 ntBASIC23.26■■□□□ 1.31
SEC61A2Q9H9S3 AC010864.1-201ENST00000609407 1511 ntBASIC23.25■■□□□ 1.31
SEC61A2Q9H9S3 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC23.25■■□□□ 1.31
SEC61A2Q9H9S3 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
SEC61A2Q9H9S3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SEC61A2Q9H9S3 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SEC61A2Q9H9S3 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SEC61A2Q9H9S3 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
SEC61A2Q9H9S3 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
SEC61A2Q9H9S3 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC23.23■■□□□ 1.31
SEC61A2Q9H9S3 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SEC61A2Q9H9S3 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.23■■□□□ 1.31
SEC61A2Q9H9S3 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC23.23■■□□□ 1.31
SEC61A2Q9H9S3 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC23.23■■□□□ 1.31
SEC61A2Q9H9S3 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SEC61A2Q9H9S3 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
SEC61A2Q9H9S3 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC23.21■■□□□ 1.31
SEC61A2Q9H9S3 MIR3665-201ENST00000578708 105 ntBASIC23.21■■□□□ 1.31
SEC61A2Q9H9S3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SEC61A2Q9H9S3 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SEC61A2Q9H9S3 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SEC61A2Q9H9S3 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
SEC61A2Q9H9S3 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SEC61A2Q9H9S3 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
SEC61A2Q9H9S3 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SEC61A2Q9H9S3 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SEC61A2Q9H9S3 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SEC61A2Q9H9S3 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SEC61A2Q9H9S3 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SEC61A2Q9H9S3 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
SEC61A2Q9H9S3 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SEC61A2Q9H9S3 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SEC61A2Q9H9S3 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC23.17■■□□□ 1.3
SEC61A2Q9H9S3 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SEC61A2Q9H9S3 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SEC61A2Q9H9S3 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SEC61A2Q9H9S3 AC087741.3-201ENST00000624270 1347 ntBASIC23.16■■□□□ 1.3
SEC61A2Q9H9S3 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC23.16■■□□□ 1.3
SEC61A2Q9H9S3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SEC61A2Q9H9S3 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SEC61A2Q9H9S3 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SEC61A2Q9H9S3 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC23.15■■□□□ 1.3
SEC61A2Q9H9S3 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SEC61A2Q9H9S3 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SEC61A2Q9H9S3 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.14■■□□□ 1.29
SEC61A2Q9H9S3 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SEC61A2Q9H9S3 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SEC61A2Q9H9S3 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
SEC61A2Q9H9S3 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
SEC61A2Q9H9S3 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SEC61A2Q9H9S3 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SEC61A2Q9H9S3 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SEC61A2Q9H9S3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC23.12■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 128.5 ms