Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC32.11■■■□□ 2.73
RPAP1Q9BWH6 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
RPAP1Q9BWH6 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
RPAP1Q9BWH6 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
RPAP1Q9BWH6 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
RPAP1Q9BWH6 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC32.08■■■□□ 2.73
RPAP1Q9BWH6 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
RPAP1Q9BWH6 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.73
RPAP1Q9BWH6 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC32.07■■■□□ 2.72
RPAP1Q9BWH6 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
RPAP1Q9BWH6 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC32.06■■■□□ 2.72
RPAP1Q9BWH6 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC32.06■■■□□ 2.72
RPAP1Q9BWH6 AL161658.1-201ENST00000623641 1967 ntBASIC32.04■■■□□ 2.72
RPAP1Q9BWH6 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
RPAP1Q9BWH6 AC021231.2-201ENST00000594613 730 ntBASIC32.04■■■□□ 2.72
RPAP1Q9BWH6 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC32.04■■■□□ 2.72
RPAP1Q9BWH6 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
RPAP1Q9BWH6 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
RPAP1Q9BWH6 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
RPAP1Q9BWH6 ABCB10P1-201ENST00000614297 2181 ntBASIC32.02■■■□□ 2.72
RPAP1Q9BWH6 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC32.01■■■□□ 2.71
RPAP1Q9BWH6 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC32.01■■■□□ 2.71
RPAP1Q9BWH6 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC32■■■□□ 2.71
RPAP1Q9BWH6 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
RPAP1Q9BWH6 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC32■■■□□ 2.71
RPAP1Q9BWH6 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
RPAP1Q9BWH6 MACF1-219ENST00000484793 834 ntTSL 2 BASIC32■■■□□ 2.71
RPAP1Q9BWH6 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
RPAP1Q9BWH6 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
RPAP1Q9BWH6 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
RPAP1Q9BWH6 AC108673.1-201ENST00000510422 1159 ntBASIC31.99■■■□□ 2.71
RPAP1Q9BWH6 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.99■■■□□ 2.71
RPAP1Q9BWH6 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC31.98■■■□□ 2.71
RPAP1Q9BWH6 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
RPAP1Q9BWH6 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.96■■■□□ 2.71
RPAP1Q9BWH6 CIB2-204ENST00000557846 934 ntTSL 3 BASIC31.96■■■□□ 2.71
RPAP1Q9BWH6 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.96■■■□□ 2.71
RPAP1Q9BWH6 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC31.96■■■□□ 2.71
RPAP1Q9BWH6 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
RPAP1Q9BWH6 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC31.95■■■□□ 2.71
RPAP1Q9BWH6 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
RPAP1Q9BWH6 MIR6090-201ENST00000622481 60 ntBASIC31.95■■■□□ 2.71
RPAP1Q9BWH6 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC31.94■■■□□ 2.7
RPAP1Q9BWH6 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.94■■■□□ 2.7
RPAP1Q9BWH6 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
RPAP1Q9BWH6 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC31.94■■■□□ 2.7
RPAP1Q9BWH6 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.93■■■□□ 2.7
RPAP1Q9BWH6 RPS2-202ENST00000526522 924 ntTSL 2 BASIC31.93■■■□□ 2.7
RPAP1Q9BWH6 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.93■■■□□ 2.7
RPAP1Q9BWH6 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.93■■■□□ 2.7
RPAP1Q9BWH6 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC31.92■■■□□ 2.7
RPAP1Q9BWH6 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
RPAP1Q9BWH6 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
RPAP1Q9BWH6 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC31.91■■■□□ 2.7
RPAP1Q9BWH6 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
RPAP1Q9BWH6 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
RPAP1Q9BWH6 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
RPAP1Q9BWH6 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.7
RPAP1Q9BWH6 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC31.88■■■□□ 2.69
RPAP1Q9BWH6 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC31.88■■■□□ 2.69
RPAP1Q9BWH6 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC31.87■■■□□ 2.69
RPAP1Q9BWH6 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.87■■■□□ 2.69
RPAP1Q9BWH6 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
RPAP1Q9BWH6 MIR4449-201ENST00000578365 66 ntBASIC31.87■■■□□ 2.69
RPAP1Q9BWH6 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
RPAP1Q9BWH6 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
RPAP1Q9BWH6 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
RPAP1Q9BWH6 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
RPAP1Q9BWH6 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
RPAP1Q9BWH6 MIR639-201ENST00000384974 98 ntBASIC31.84■■■□□ 2.69
RPAP1Q9BWH6 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC31.84■■■□□ 2.69
RPAP1Q9BWH6 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.84■■■□□ 2.69
RPAP1Q9BWH6 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC31.84■■■□□ 2.69
RPAP1Q9BWH6 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.83■■■□□ 2.69
RPAP1Q9BWH6 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC31.82■■■□□ 2.69
RPAP1Q9BWH6 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC31.82■■■□□ 2.69
RPAP1Q9BWH6 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.81■■■□□ 2.68
RPAP1Q9BWH6 RNF166-209ENST00000567844 633 ntTSL 5 BASIC31.81■■■□□ 2.68
RPAP1Q9BWH6 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
RPAP1Q9BWH6 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.79■■■□□ 2.68
RPAP1Q9BWH6 LINC01971-201ENST00000617888 1048 ntBASIC31.79■■■□□ 2.68
RPAP1Q9BWH6 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
RPAP1Q9BWH6 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
RPAP1Q9BWH6 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
RPAP1Q9BWH6 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.76■■■□□ 2.68
RPAP1Q9BWH6 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
RPAP1Q9BWH6 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
RPAP1Q9BWH6 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC31.75■■■□□ 2.67
RPAP1Q9BWH6 MIR3648-2-201ENST00000581792 180 ntBASIC31.75■■■□□ 2.67
RPAP1Q9BWH6 MIR3648-1-201ENST00000615959 180 ntBASIC31.75■■■□□ 2.67
RPAP1Q9BWH6 ST7-AS1-201ENST00000456775 1889 ntBASIC31.75■■■□□ 2.67
RPAP1Q9BWH6 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.75■■■□□ 2.67
RPAP1Q9BWH6 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC31.74■■■□□ 2.67
RPAP1Q9BWH6 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
RPAP1Q9BWH6 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
RPAP1Q9BWH6 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC31.73■■■□□ 2.67
RPAP1Q9BWH6 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
RPAP1Q9BWH6 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC31.73■■■□□ 2.67
RPAP1Q9BWH6 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
RPAP1Q9BWH6 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC31.73■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms