Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
LRCH3Q96II8 AC019069.1-201ENST00000610008 1333 ntBASIC29.2■■■□□ 2.26
LRCH3Q96II8 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC29.19■■■□□ 2.26
LRCH3Q96II8 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
LRCH3Q96II8 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
LRCH3Q96II8 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
LRCH3Q96II8 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC29.17■■■□□ 2.26
LRCH3Q96II8 TPT1-202ENST00000379055 948 ntTSL 2 BASIC29.17■■■□□ 2.26
LRCH3Q96II8 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC29.17■■■□□ 2.26
LRCH3Q96II8 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC29.17■■■□□ 2.26
LRCH3Q96II8 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC29.16■■■□□ 2.26
LRCH3Q96II8 CEP120-209ENST00000515110 606 ntTSL 3 BASIC29.15■■■□□ 2.26
LRCH3Q96II8 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
LRCH3Q96II8 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC29.13■■■□□ 2.25
LRCH3Q96II8 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
LRCH3Q96II8 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC29.12■■■□□ 2.25
LRCH3Q96II8 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC29.11■■■□□ 2.25
LRCH3Q96II8 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
LRCH3Q96II8 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.1■■■□□ 2.25
LRCH3Q96II8 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
LRCH3Q96II8 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
LRCH3Q96II8 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
LRCH3Q96II8 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
LRCH3Q96II8 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
LRCH3Q96II8 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
LRCH3Q96II8 CHML-204ENST00000638121 920 ntTSL 2 BASIC29.07■■■□□ 2.24
LRCH3Q96II8 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
LRCH3Q96II8 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
LRCH3Q96II8 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC29.05■■■□□ 2.24
LRCH3Q96II8 MTURN-203ENST00000409688 843 ntTSL 2 BASIC29.04■■■□□ 2.24
LRCH3Q96II8 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC29.04■■■□□ 2.24
LRCH3Q96II8 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC29.03■■■□□ 2.24
LRCH3Q96II8 RARRES2P1-201ENST00000474487 481 ntBASIC29.02■■■□□ 2.24
LRCH3Q96II8 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC29.02■■■□□ 2.24
LRCH3Q96II8 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
LRCH3Q96II8 AL592295.1-201ENST00000400984 884 ntBASIC29.01■■■□□ 2.23
LRCH3Q96II8 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC29.01■■■□□ 2.23
LRCH3Q96II8 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC29■■■□□ 2.23
LRCH3Q96II8 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
LRCH3Q96II8 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC28.98■■■□□ 2.23
LRCH3Q96II8 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC28.97■■■□□ 2.23
LRCH3Q96II8 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
LRCH3Q96II8 GFER-205ENST00000569451 517 ntTSL 5 BASIC28.96■■■□□ 2.23
LRCH3Q96II8 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC28.96■■■□□ 2.23
LRCH3Q96II8 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC28.96■■■□□ 2.23
LRCH3Q96II8 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC28.95■■■□□ 2.22
LRCH3Q96II8 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC28.95■■■□□ 2.22
LRCH3Q96II8 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC28.95■■■□□ 2.22
LRCH3Q96II8 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC28.95■■■□□ 2.22
LRCH3Q96II8 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC28.95■■■□□ 2.22
LRCH3Q96II8 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC28.94■■■□□ 2.22
LRCH3Q96II8 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC28.93■■■□□ 2.22
LRCH3Q96II8 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
LRCH3Q96II8 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC28.91■■■□□ 2.22
LRCH3Q96II8 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
LRCH3Q96II8 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
LRCH3Q96II8 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
LRCH3Q96II8 AC022413.1-201ENST00000624602 984 ntBASIC28.91■■■□□ 2.22
LRCH3Q96II8 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC28.9■■■□□ 2.22
LRCH3Q96II8 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
LRCH3Q96II8 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
LRCH3Q96II8 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
LRCH3Q96II8 CHST11-202ENST00000546689 756 ntTSL 2 BASIC28.88■■■□□ 2.21
LRCH3Q96II8 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
LRCH3Q96II8 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC28.87■■■□□ 2.21
LRCH3Q96II8 U85056.1-201ENST00000616429 682 ntBASIC28.87■■■□□ 2.21
LRCH3Q96II8 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
LRCH3Q96II8 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
LRCH3Q96II8 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
LRCH3Q96II8 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
LRCH3Q96II8 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC28.85■■■□□ 2.21
LRCH3Q96II8 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC28.84■■■□□ 2.21
LRCH3Q96II8 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
LRCH3Q96II8 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC28.84■■■□□ 2.21
LRCH3Q96II8 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
LRCH3Q96II8 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
LRCH3Q96II8 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
LRCH3Q96II8 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
LRCH3Q96II8 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC28.82■■■□□ 2.2
LRCH3Q96II8 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
LRCH3Q96II8 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
LRCH3Q96II8 TSPY13P-201ENST00000338964 914 ntBASIC28.8■■■□□ 2.2
LRCH3Q96II8 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
LRCH3Q96II8 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC28.78■■■□□ 2.2
LRCH3Q96II8 HES4-202ENST00000428771 1040 ntTSL 2 BASIC28.77■■■□□ 2.2
LRCH3Q96II8 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC28.77■■■□□ 2.2
LRCH3Q96II8 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC28.77■■■□□ 2.2
LRCH3Q96II8 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
LRCH3Q96II8 AC004987.1-201ENST00000428627 508 ntBASIC28.76■■■□□ 2.19
LRCH3Q96II8 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC28.74■■■□□ 2.19
LRCH3Q96II8 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
LRCH3Q96II8 HYI-213ENST00000583037 1322 ntTSL 5 BASIC28.73■■■□□ 2.19
LRCH3Q96II8 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC28.73■■■□□ 2.19
LRCH3Q96II8 GUK1-208ENST00000366728 842 ntTSL 2 BASIC28.72■■■□□ 2.19
LRCH3Q96II8 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
LRCH3Q96II8 ATP5G2P3-201ENST00000429083 425 ntBASIC28.71■■■□□ 2.19
LRCH3Q96II8 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC28.71■■■□□ 2.19
LRCH3Q96II8 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC28.71■■■□□ 2.19
LRCH3Q96II8 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC28.71■■■□□ 2.19
LRCH3Q96II8 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms