Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
PTCHD3Q3KNS1 AC087741.3-201ENST00000624270 1347 ntBASIC25.68■■□□□ 1.7
PTCHD3Q3KNS1 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC25.68■■□□□ 1.7
PTCHD3Q3KNS1 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC25.68■■□□□ 1.7
PTCHD3Q3KNS1 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC25.68■■□□□ 1.7
PTCHD3Q3KNS1 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
PTCHD3Q3KNS1 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PTCHD3Q3KNS1 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC25.67■■□□□ 1.7
PTCHD3Q3KNS1 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PTCHD3Q3KNS1 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PTCHD3Q3KNS1 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC25.66■■□□□ 1.7
PTCHD3Q3KNS1 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
PTCHD3Q3KNS1 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
PTCHD3Q3KNS1 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
PTCHD3Q3KNS1 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
PTCHD3Q3KNS1 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
PTCHD3Q3KNS1 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
PTCHD3Q3KNS1 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC25.64■■□□□ 1.7
PTCHD3Q3KNS1 ABCB10P3-201ENST00000561950 2166 ntBASIC25.64■■□□□ 1.7
PTCHD3Q3KNS1 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC25.64■■□□□ 1.7
PTCHD3Q3KNS1 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
PTCHD3Q3KNS1 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PTCHD3Q3KNS1 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTCHD3Q3KNS1 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTCHD3Q3KNS1 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC25.63■■□□□ 1.69
PTCHD3Q3KNS1 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC25.63■■□□□ 1.69
PTCHD3Q3KNS1 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
PTCHD3Q3KNS1 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC25.61■■□□□ 1.69
PTCHD3Q3KNS1 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
PTCHD3Q3KNS1 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PTCHD3Q3KNS1 AC010864.1-201ENST00000609407 1511 ntBASIC25.6■■□□□ 1.69
PTCHD3Q3KNS1 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
PTCHD3Q3KNS1 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC25.6■■□□□ 1.69
PTCHD3Q3KNS1 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.6■■□□□ 1.69
PTCHD3Q3KNS1 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC25.59■■□□□ 1.69
PTCHD3Q3KNS1 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
PTCHD3Q3KNS1 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
PTCHD3Q3KNS1 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
PTCHD3Q3KNS1 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
PTCHD3Q3KNS1 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
PTCHD3Q3KNS1 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC25.57■■□□□ 1.68
PTCHD3Q3KNS1 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PTCHD3Q3KNS1 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
PTCHD3Q3KNS1 AC044849.2-201ENST00000606596 710 ntBASIC25.56■■□□□ 1.68
PTCHD3Q3KNS1 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
PTCHD3Q3KNS1 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
PTCHD3Q3KNS1 AC139426.1-201ENST00000568218 2529 ntBASIC25.56■■□□□ 1.68
PTCHD3Q3KNS1 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
PTCHD3Q3KNS1 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
PTCHD3Q3KNS1 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC25.54■■□□□ 1.68
PTCHD3Q3KNS1 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
PTCHD3Q3KNS1 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PTCHD3Q3KNS1 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PTCHD3Q3KNS1 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC25.52■■□□□ 1.68
PTCHD3Q3KNS1 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
PTCHD3Q3KNS1 RPS2-209ENST00000529806 993 ntTSL 3 BASIC25.51■■□□□ 1.67
PTCHD3Q3KNS1 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
PTCHD3Q3KNS1 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PTCHD3Q3KNS1 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
PTCHD3Q3KNS1 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PTCHD3Q3KNS1 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
PTCHD3Q3KNS1 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
PTCHD3Q3KNS1 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC25.48■■□□□ 1.67
PTCHD3Q3KNS1 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTCHD3Q3KNS1 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
PTCHD3Q3KNS1 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
PTCHD3Q3KNS1 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PTCHD3Q3KNS1 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PTCHD3Q3KNS1 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC25.47■■□□□ 1.67
PTCHD3Q3KNS1 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
PTCHD3Q3KNS1 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PTCHD3Q3KNS1 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PTCHD3Q3KNS1 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC25.46■■□□□ 1.67
PTCHD3Q3KNS1 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
PTCHD3Q3KNS1 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
PTCHD3Q3KNS1 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
PTCHD3Q3KNS1 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
PTCHD3Q3KNS1 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
PTCHD3Q3KNS1 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
PTCHD3Q3KNS1 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC25.45■■□□□ 1.66
PTCHD3Q3KNS1 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
PTCHD3Q3KNS1 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
PTCHD3Q3KNS1 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PTCHD3Q3KNS1 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
PTCHD3Q3KNS1 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PTCHD3Q3KNS1 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
PTCHD3Q3KNS1 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PTCHD3Q3KNS1 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PTCHD3Q3KNS1 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
PTCHD3Q3KNS1 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
PTCHD3Q3KNS1 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
PTCHD3Q3KNS1 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC25.42■■□□□ 1.66
PTCHD3Q3KNS1 ABHD17AP4-201ENST00000411545 909 ntBASIC25.42■■□□□ 1.66
PTCHD3Q3KNS1 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
PTCHD3Q3KNS1 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
PTCHD3Q3KNS1 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PTCHD3Q3KNS1 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PTCHD3Q3KNS1 BOD1-206ENST00000480951 814 ntTSL 2 BASIC25.4■■□□□ 1.66
PTCHD3Q3KNS1 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PTCHD3Q3KNS1 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms