Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
APOBP04114 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC16.96■□□□□ 0.31
APOBP04114 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
APOBP04114 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
APOBP04114 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
APOBP04114 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
APOBP04114 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
APOBP04114 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC16.94■□□□□ 0.3
APOBP04114 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
APOBP04114 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
APOBP04114 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
APOBP04114 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
APOBP04114 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
APOBP04114 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
APOBP04114 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC16.93■□□□□ 0.3
APOBP04114 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
APOBP04114 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC16.93■□□□□ 0.3
APOBP04114 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
APOBP04114 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
APOBP04114 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC16.91■□□□□ 0.3
APOBP04114 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
APOBP04114 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
APOBP04114 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
APOBP04114 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
APOBP04114 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
APOBP04114 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC16.9■□□□□ 0.3
APOBP04114 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
APOBP04114 GPX1-201ENST00000419349 1106 ntBASIC16.9■□□□□ 0.3
APOBP04114 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
APOBP04114 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC16.89■□□□□ 0.29
APOBP04114 CHML-204ENST00000638121 920 ntTSL 2 BASIC16.89■□□□□ 0.29
APOBP04114 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC16.89■□□□□ 0.29
APOBP04114 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
APOBP04114 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
APOBP04114 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
APOBP04114 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
APOBP04114 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC16.86■□□□□ 0.29
APOBP04114 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC16.86■□□□□ 0.29
APOBP04114 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
APOBP04114 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
APOBP04114 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
APOBP04114 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
APOBP04114 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC16.84■□□□□ 0.29
APOBP04114 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC16.84■□□□□ 0.29
APOBP04114 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
APOBP04114 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
APOBP04114 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
APOBP04114 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
APOBP04114 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC16.83■□□□□ 0.28
APOBP04114 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
APOBP04114 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
APOBP04114 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
APOBP04114 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
APOBP04114 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
APOBP04114 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
APOBP04114 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
APOBP04114 NTF6A-201ENST00000591175 560 ntBASIC16.8■□□□□ 0.28
APOBP04114 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
APOBP04114 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
APOBP04114 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
APOBP04114 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC16.79■□□□□ 0.28
APOBP04114 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
APOBP04114 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC16.79■□□□□ 0.28
APOBP04114 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
APOBP04114 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
APOBP04114 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
APOBP04114 CEP120-209ENST00000515110 606 ntTSL 3 BASIC16.77■□□□□ 0.28
APOBP04114 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC16.77■□□□□ 0.27
APOBP04114 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOBP04114 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC16.76■□□□□ 0.27
APOBP04114 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
APOBP04114 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
APOBP04114 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC16.75■□□□□ 0.27
APOBP04114 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
APOBP04114 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
APOBP04114 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
APOBP04114 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOBP04114 GFER-205ENST00000569451 517 ntTSL 5 BASIC16.73■□□□□ 0.27
APOBP04114 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOBP04114 TPT1-202ENST00000379055 948 ntTSL 2 BASIC16.73■□□□□ 0.27
APOBP04114 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC16.73■□□□□ 0.27
APOBP04114 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
APOBP04114 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
APOBP04114 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
APOBP04114 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
APOBP04114 AC008813.1-201ENST00000536597 885 ntBASIC16.72■□□□□ 0.27
APOBP04114 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
APOBP04114 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC16.71■□□□□ 0.27
APOBP04114 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
APOBP04114 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
APOBP04114 CHST11-202ENST00000546689 756 ntTSL 2 BASIC16.71■□□□□ 0.27
APOBP04114 AL033527.3-201ENST00000566366 1196 ntBASIC16.7■□□□□ 0.26
APOBP04114 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC16.7■□□□□ 0.26
APOBP04114 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOBP04114 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOBP04114 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC16.7■□□□□ 0.26
APOBP04114 AC018358.1-201ENST00000631079 1402 ntBASIC16.7■□□□□ 0.26
APOBP04114 LINC00273-201ENST00000539813 1452 ntBASIC16.7■□□□□ 0.26
APOBP04114 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOBP04114 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 7.6 ms